NONE-No attached Diamond beamline
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Abstract: The Advanced Photon Source and other existing storage ring light sources are contemplating replacing an existing, operating storage ring with a multi-bend achromat lattice. One issue is that existing light sources have large user communities who are greatly inconvenienced by extended shutdowns. Hence, there will be a premium placed on rapid commissioning of the new lattice. To better understand the possibilities, we undertook a survey of recent commissioning experience at third-generation light sources. We present a summary of that survey here.
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May 2015
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NONE-No attached Diamond beamline
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Przemyslaw
Nogly
,
Daniel
James
,
Dingjie
Wang
,
Thomas A.
White
,
Nadia
Zatsepin
,
Anastasya
Shilova
,
Garrett
Nelson
,
Haiguang
Liu
,
Linda
Johansson
,
Michael
Heymann
,
Kathrin
Jaeger
,
Markus
Metz
,
Cecilia
Wickstrand
,
Wenting
Wu
,
Petra
Båth
,
Peter
Berntsen
,
Dominik
Oberthuer
,
Valerie
Panneels
,
Vadim
Cherezov
,
Isabel
Moraes
,
Henry
Chapman
,
Gebhard
Schertler
,
Richard
Neutze
,
John
Spence
,
Manfred
Burghammer
,
Joerg
Standfuss
,
Uwe
Weierstall
Open Access
Abstract: Lipidic cubic phases (LCPs) have emerged as successful matrixes for the crystallization of membrane proteins. Moreover, the viscous LCP also provides a highly effective delivery medium for serial femtosecond crystallography (SFX) at X-ray free-electron lasers (XFELs). Here, the adaptation of this technology to perform serial millisecond crystallography (SMX) at more widely available synchrotron microfocus beamlines is described. Compared with conventional microcrystallography, LCP-SMX eliminates the need for difficult handling of individual crystals and allows for data collection at room temperature. The technology is demonstrated by solving a structure of the light-driven proton-pump bacteriorhodopsin (bR) at a resolution of 2.4 Å. The room-temperature structure of bR is very similar to previous cryogenic structures but shows small yet distinct differences in the retinal ligand and proton-transfer pathway.
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Mar 2015
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NONE-No attached Diamond beamline
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R.
Lo Conte
,
E.
Martinez
,
A.
Hrabec
,
A.
Lamperti
,
T.
Schulz
,
L.
Nasi
,
L.
Lazzarini
,
R.
Mantovan
,
F.
Maccherozzi
,
S.
Dhesi
,
B.
Ocker
,
Christopher
Marrows
,
Thomas
Moore
,
Mathias
Klaui
Abstract: We report on current-induced domain wall motion in Ta/Co20Fe60B20/MgO nanowires. Domain walls are observed to move against the electron flow when no magnetic field is applied, while a field along the nanowires strongly affects the domain wall motion velocity. A symmetric effect is observed for up-down and down-up domain walls. This indicates the presence of right-handed domain walls, due to a Dzyaloshinskii-Moriya interaction (DMI) with a DMI coefficient D=+0.06mJ/m2. The positive DMI coefficient is interpreted to be a consequence of B diffusion into the Ta buffer layer during annealing, which was observed by chemical depth profiling measurements. The experimental results are compared to one-dimensional model simulations including the effects of pinning. This modeling allows us to reproduce the experimental outcomes and reliably extract a spin-Hall angle θSH=0.11 for Ta in the nanowires, showing the importance of an analysis that goes beyond the model for perfect nanowires.
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Jan 2015
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NONE-No attached Diamond beamline
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Abstract: Topological insulator (TI) thin films of Biinline imageSeinline image and Biinline imageTeinline image have been successfully grown on amorphous fused silica (vitreous SiOinline image) substrates by molecular beam epitaxy. We find that such growth is possible and investigations by X-ray diffraction reveal good crystalline quality with a high degree of order along the c-axis. Atomic force microscopy, electron backscatter diffraction and X-ray reflectivity are used to study the surface morphology and structural film parameters. Angle-resolved photoemission spectroscopy studies confirm the existence of a topological surface state. This work shows that TI films can be grown on amorphous substrates, while maintaining the topological surface state despite the lack of in-plane rotational order of the domains. The growth on fused silica presents a promising route to detailed thermoelectric measurements of TI films, free from unwanted thermal, electrical, and piezoelectric influences from the substrate.
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Jan 2015
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NONE-No attached Diamond beamline
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Open Access
Abstract: We present the catalyst-free growth of binary Bi2Te3 topological insulator nanostructures on c-plane sapphire substrates by molecular beam epitaxy. Dense arrays of single-crystalline nanostructures, growing along the [110] direction, are obtained for substrate temperatures ranging from ∼180 °C to 260 °C. The growth rate and shape of the nanostructures are highly temperature-dependent. The microscopic study of the nanostructures and their relationship to the underlying Bi2Te3 thin film gives an insight into the growth mechanism.
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Oct 2014
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NONE-No attached Diamond beamline
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Abstract: Diamond Light Source (DLS) provides a suite of world-leading beamlines for macromolecular crystallography (MX) experiments which are used by scientists from all over the world. Key to their success is an integrated approach to automating the hardware and software environments such that it is only necessary to enter the beamline hutch to change large batches of samples for the robotic
sample changers. Alongside investing in automation, all beamlines are also equipped with Pilatus 6M-F detectors (25 – 100 Hz) resulting in fast data collections and high turnover of samples. Rapid downstream processing of the resulting data has been developed since this is essential to drive experimental decisions. The feedback from these pipelines needs to be made readily available to users in a timely manner and a number of tools are available for both local and remote visualization of results. Remote access to these facilities was a design requirement from the outset. Several tools have been integrated and developed to streamline the process of remote access yet give the same software environment remotely as would be experienced if the experimenter was present at the
beamline. The advent of remote access for cryogenically frozen samples has led to the implementation of new shift patterns for the
user programme, enabling frequent short shifts for the many groups who use DLS. Remote access to MX beamlines is also a prerequisite of many industrial clients of DLS. For the future we are moving forward with the development of remote access for insitu data collection from crystallization plates following on from the success of this method for screening and collecting data by users at the beamlines. The implementation and impact of remote access at DLS will be presented here.
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Aug 2014
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NONE-No attached Diamond beamline
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Abstract: The CCP4 software suite [1] provides a comprehensive set of tools for use in the macromolecule structure solution process by X-ray
crystallography. Traditionally, these tools have been run through the graphical interface or the command line on each user's personal workstation. Recently, some of the tools, including the molecular replacement pipelines Balbes [2] and MrBUMP [3] have been provided as web services in the Research Complex at Harwell. These pipelines can be especially useful in cases where there is low
sequence identity between the target-structure sequence and that of its set of possible homologues. These services can be accessed
through a web client, allowing one to submit molecular replacement jobs to our Linux cluster and view the results from these jobs. The molecular replacement pipelines are ideal candidates for web services, as they require installation and maintenance of large databases and benefit from parallel computing resources, provided by the cluster. Further plans for web services will be discussed. With ever-increasing mobility of scientific setups and the ubiquity of ultra-portable devices, there is a demand for a consistent
framework of remote crystallographic computations and data maintenance. This framework is planned to include an interface for synchronising data with the facilities of Diamond Light Source, as well as with local CCP4 GUI-2 setups.
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Aug 2014
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NONE-No attached Diamond beamline
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Abstract: Accurate electron density mapping is quite a common practice for crystals cooled at low temperature and accurately measured. This
is not true for species under external perturbation, due to complicated experimental conditions. Studying molecular crystals in excitedstates is a challenge, Coppens(2009), and a purely experimental electron density mapping is not possible at present. So far, the samelimitation affected molecular crystals at high pressure, with only few attempts to use theoretical multipoles to fit experimental data,Fabbiani (2011). Here we report on the first unconstrained multipolar model, refined for syn-l,6;8,13 biscarbonyl[14]annulene (BCA)
at P=7.7 GPa. BCA was the subject of a low temperature data collection by Destro (1995). The molecule (close to C2v symmetry) has afair aromaticity, but it progressively localizes double and single bonds as a function of pressure. At 7.7 GPa the geometrical distortionis quite evident and mirrored by the electron density. The experiment, carried out at Diamond Light Source, was possible combining:a) high energy (40 Kev) to overcome the resolution problems caused by diamond anvil cells and reduce absorption and extinction; b)microfocused beam (30 micron) to minimize spurious X-ray diffusion; c) two crystals in the DAC, to increase data coverage; d)sufficient pressure to quench atomic motion. The final agreement is obviously worse than what typically obtained at ambientpressure. However, the model is satisfactory because: a) the deformation density is sensible and in agreement with the calculated
one; b) the distribution of residuals is normal and no significant error is evident. The study proves that aromatic molecules are morereactive when squeezed, in keeping with the recent theoretical study by Hoffmann et al. on benzene. The Figure shows the staticdeformation density of BCA in 3D, obtained from a multipolar model refined against the experimental structure factors.
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Aug 2014
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NONE-No attached Diamond beamline
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Abstract: We present a comparative study of TiO2-based and Au catalysts for the physical vapor deposition of (Bi1− x Sb x )2Se3 topological insulator nanowires. The standard Au nanoparticle catalyst was compared to five TiO2 nanoparticle based catalysts (anatase, rutile, P-25, high surface area anatase, and TiO2 supported Au particles). The use of Au nanoparticles seriously harms the properties of nanowires, thereby limiting their application. In contrast, TiO2 based catalysts lead to the residue-free growth of nanowires with a higher degree of crystallinity. Homogeneous nanowire ensembles are achieved with the mixed phase P-25 catalyst, and a possible growth mechanism is proposed.
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Jun 2014
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NONE-No attached Diamond beamline
Accelerator Physics
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S.
Spampinati
,
D.
Angal-Kalinin
,
A. D.
Brynes
,
D
Dunning
,
J. K.
Jones
,
K.
Marinov
,
J. W.
Mckenzie
,
B. L.
Militsyn
,
N. R.
Thompson
,
P. H.
Williams
,
I. P.
Martin
Abstract: We present recent developments in the accelerator design of CLARA (Compact Linear Accelerator for Research and Applications), the proposed UK FEL test facility at Daresbury Laboratory. The layout changes include a dedicated collimator in CLARA front end to provide some control over the dark current, changes to low energy diagnostics section and modifications to FEL modules. The progress in the design simulations mainly focus on injector simulations incorporating wake fields in ASTRA, comparison of using ELEGANT and CSRTRACK for the Variable Bunch Compressor and first considerations of requirement of laser heater for CLARA.
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May 2014
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