NONE-No attached Diamond beamline
Accelerator Physics
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Abstract: Ultra-low emittance lattices will operate with reduced dynamics apertures. New injection schemes are currently investigated in order to guarantee sufficient injection efficiency. A promising candidate is a pulsed kicker with a nonlinear magnetic field. The studies presented in this paper prove that this kicker allows injection with reduced dynamic aperture and provide minimal perturbation of the stored beam during Top-Up injection. Plans to install such a device at the Diamond light source are outlined.
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May 2013
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NONE-No attached Diamond beamline
Optics
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Open Access
Abstract: Since March 2013, the Diamond storage ring has been operated with a target vertical emittance of 8 pm.rad. This condition is achieved by first applying a LOCO* optics correction with IDs set to their typical gaps, then offsetting the skew quadrupole magnets in order to increase the vertical emittance again to the desired value. Whilst a feedback application** is able to stabilise the vertical emittance during ID gap and phase changes in the short to medium term, regular applications of LOCO are still required to maintain good coupling control in the longer term. In this paper we describe measures taken to speed up the optics correction procedure, including a fast orbit response matrix measurement, a reduction of the number of magnets used to measure the data, and a distribution of the LOCO calculations to run in parallel.
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May 2014
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NONE-No attached Diamond beamline
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Abstract: Two high-pressure polymorphs of sulfuric acid monohydrate (oxonium hydrogensulfate) have been obtained at ambient temperature by crystallisation at high pressure from the liquid at 1.3 GPa (form III) and by direct compression of the ambient-pressure form I first to 1.26 GPa (form II) and then to 1.72 GPa (form III). The structure of form III was solved by single crystal X-ray diffraction and this structure was used as the basis for the refinement of hydrogen positions using high-pressure neutron powder diffraction data. Form III crystallises in the orthorhombic crystal system at 1.97 GPa, and features parallel chains of hydrogensulfate ions linked by oxonium ions to form a three-dimensional hydrogen-bonded network. On further compression to 3.05 GPa, the direction of maximum compressibility is found to be along the a-axis and is associated with the shortening of a hydrogen bond between a hydrogensulfate ion and an oxonium ion. The structure of form II remains elusive although at ambient temperature it is stable (or metastable) at pressures as low as 0.42 GPa, perhaps indicating that it could be recoverable to ambient-pressure at low temperature.
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Jan 2008
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NONE-No attached Diamond beamline
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Abstract: In the most common version of an oscillometric blood pressure monitor, the output from the pressure transducer, Y(t), is split into two parts, and used for separate determinations of the pressure inside the pneumatic cuff and its fluc-tuating part; the latter is derived by sending Y(t) to a high-pass filter (HPF) and amplifying the fil-tered part to obtain the oscillometric signal O(t). Using a typical HPF-amplifier combination, we show that if p(t), the pulsatile part of the cuff pressure, is defined to be a train of positive-going pulses, O(t) turns out to be rather close but not identical to dp/dt, and to demonstrate that one can easily retrieve p(t) from a record of O(t). This means that, with a small modification, the instrument can provide both p(t) and dp/dt; the practical advantages of this demonstration are pointed out.
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Aug 2008
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NONE-No attached Diamond beamline
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Kevin P.
Guay
,
Roberta
Ibba
,
John L.
Kiappes
,
Snežana
Vasiljević
,
Francesco
Bonì
,
Maria
De Benedictis
,
Ilaria
Zeni
,
James D.
Le Cornu
,
Mario
Hensen
,
Anu V.
Chandran
,
Anastassia L.
Kantsadi
,
Alessandro T.
Caputo
,
Juan I.
Blanco Capurro
,
Yusupha
Bayo
,
Johan C.
Hill
,
Kieran
Hudson
,
Andrea
Lia
,
Juliane
Brun
,
Stephen G.
Withers
,
Marcelo
Martí
,
Emiliano
Biasini
,
Angelo
Santino
,
Matteo
De Rosa
,
Mario
Milani
,
Carlos P.
Modenutti
,
Daniel N.
Hebert
,
Nicole
Zitzmann
,
Pietro
Roversi
Diamond Proposal Number(s):
[19758]
Open Access
Abstract: Misfolded glycoprotein recognition and endoplasmic reticulum (ER) retention are mediated by the ER glycoprotein folding Quality Control (ERQC) checkpoint enzyme, UDP-Glucose glycoprotein glucosyltransferase (UGGT). UGGT modulation is a promising strategy for broad-spectrum antivirals, rescue-of-secretion therapy in rare disease caused by responsive mutations in glycoprotein genes, and many cancers, but to date no selective UGGT inhibitors are known. The small molecule 5-[(morpholin-4-yl)methyl]quinolin-8-ol (5M-8OH-Q) binds a CtUGGTGT24 ‘WY’ conserved surface motif conserved across UGGTs but not present in other GT24 family glycosyltransferases. 5M-8OH-Q has a 47 μM binding affinity for CtUGGTGT24 in vitro as measured by ligand-enhanced fluorescence. In cellula, 5M-8OH-Q inhibits both human UGGT isoforms at concentrations higher than 750 μM. 5M-8OH-Q binding to CtUGGTGT24 appears to be mutually exclusive to M5-9 glycan binding in an in vitro competition experiment. A medicinal program based on 5M-8OH-Q will yield the next generation of UGGT inhibitors.
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Sep 2023
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NONE-No attached Diamond beamline
Metrology
Optics
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Abstract: High-reflectivity multilayers are required in many soft X-ray researches, from nowadays Synchrotron Radiation (SR) to future Free Electron Laser (FEL) optics. These synthetic reflectors are capable of working at near-normal incidence covering the lower X energy range not accessible by crystal diffraction. Recently, the deposition of such devices has progressed at INFN Legnaro Laboratories (LNL), giving robust Si/Mo mirror devices and first Ni/Ti and Ni/TiO2 multilayers. To test these new optics, at INFN Frascati Laboratories (LNF) a new vacuum compatible reflectometer has been assembled and commissioned in 2005. The final system is a θ-2θ diffractometer in vacuum environment, endowed with high angular resolution and repeatability and absolute detectors. A direct characterization of multilayer performances have been accomplished by SR from a wiggler source at DAΦNE. Results on characterization of the vacuum reflectometer and on the new Ni-Ti based multilayers are presented.
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Jun 2006
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NONE-No attached Diamond beamline
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Abstract: The solvation structure of yttrium (III) in dimethyl sulfoxide has been determined by studying both the extended X-ray absorption fine structure (EXAFS) and the X-ray absorption near edge structure (XANES) regions of the Y K-edge absorption spectra. Although the EXAFS technique provides accurate information about the next neighbors coordination distances, no unambiguous determination of the coordination polyhedron is obtained. This failure is counteracted by the study of the near-edge part of the absorption spectrum (XANES) because of its high sensitivity to the bonding geometry. We have performed an extensive and systematic ab initio computation of the Y K-edge XANES spectrum of yttrium (III) in dimethyl sulfoxide within the multiple-scattering framework. The comparison between the experimental data and the theoretical calculations has demonstrated that the solvation sphere of the yttrium cation is best modeled by eight dimethyl sulfoxide molecules each oriented to give an Y−O−S angle close to 130°.
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Feb 2009
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NONE-No attached Diamond beamline
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Alice
Douangamath
,
Alisa
Powell
,
Daren
Fearon
,
Patrick M.
Collins
,
Romain
Talon
,
Tobias
Krojer
,
Rachael
Skyner
,
Jose
Brandao-Neto
,
Louise
Dunnett
,
Alexandre
Dias
,
Anthony
Aimon
,
Nicholas M.
Pearce
,
Conor
Wild
,
Tyler J.
Gorrie-Stone
,
Frank
Von Delft
Open Access
Abstract: In fragment-based drug discovery, hundreds or often thousands of compounds smaller than ~300 Da are tested against the protein of interest to identify chemical entities that can be developed into potent drug candidates. Since the compounds are small, interactions are weak, and the screening method must therefore be highly sensitive; moreover, structural information tends to be crucial for elaborating these hits into lead-like compounds. Therefore, protein crystallography has always been a gold-standard technique, yet historically too challenging to find widespread use as a primary screen.
Initial XChem experiments were demonstrated in 2014 and then trialed with academic and industrial collaborators to validate the process. Since then, a large research effort and significant beamtime have streamlined sample preparation, developed a fragment library with rapid follow-up possibilities, automated and improved the capability of I04-1 beamline for unattended data collection, and implemented new tools for data management, analysis and hit identification.
XChem is now a facility for large-scale crystallographic fragment screening, supporting the entire crystals-to-deposition process, and accessible to academic and industrial users worldwide. The peer-reviewed academic user program has been actively developed since 2016, to accommodate projects from as broad a scientific scope as possible, including well-validated as well as exploratory projects. Academic access is allocated through biannual calls for peer-reviewed proposals, and proprietary work is arranged by Diamond's Industrial Liaison group. This workflow has already been routinely applied to over a hundred targets from diverse therapeutic areas, and effectively identifies weak binders (1%-30% hit rate), which both serve as high-quality starting points for compound design and provide extensive structural information on binding sites. The resilience of the process was demonstrated by continued screening of SARS-CoV-2 targets during the COVID-19 pandemic, including a 3-week turn-around for the main protease.
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May 2021
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NONE-No attached Diamond beamline
Insertion Devices
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Abstract: Diamond plans to operate a 5 m, long period length, APPLE undulator in a long insertion straight section. Theoretical investigations showed a severe impact on machine dynamics especially when the device is operated in vertical polarization mode. The use of local optics corrections and/or lowering of beta functions were initially investigated as possible solutions but with limited success. Active shimming of dynamic multipoles, following the approach at BESSY-II, proved more effective. The optimum shiming has been devised using kick map approach. In this paper we review the theoretical analysis, the commissioning of the active shims and the undulator, and the net effect of the undulator after compensation.
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May 2013
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NONE-No attached Diamond beamline
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Keisuke
Ito
,
Taishi
Sugawara
,
Mitsumorni
Shiroishi
,
Natsuko
Tokuda
,
Azusa
Kurokawa
,
Takeshi
Misaka
,
Hisayoshi
Makyio
,
Takami
Yurugi-Kobayashi
,
Tatsuro
Shimamura
,
Norimichi
Nomura
,
Takeshi
Murata
,
Keiko
Abe
,
So
Iwata
,
Takuya
Kobayashi
Abstract: Crystallization of eukaryotic membrane proteins is a challenging, iterative process. The protein of interest is often modified in an attempt to improve crystallization and diffraction results. To accelerate this process, we took advantage of a GFP-fusion yeast expression system that uses PCR to direct homologous recombination and gene cloning. We explored the possibility of employing more than one PCR fragment to introduce various mutations in a single step, and found that when up to five PCR fragments were co-transformed into yeast, the recombination frequency was maintained as the number of fragments was increased. All transformants expressed the model membrane protein, while the resulting plasmid from each clone contained the designed mutations only. Thus, we have demonstrated a technique allowing the expression of mutant membrane proteins within 5 days, combining a GFP-fusion expression system and yeast homologous recombination.
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Jul 2008
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