I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[14027]
Open Access
Abstract: Zn–air batteries are very promising devices for energy storage at high energy density due to their intrinsic safety, environmental friendliness, and low cost, but still, there are key issues to be solved to get to the industrial scale. One of the unsolved problems is the poor cyclability of batteries based on aqueous solvents that urges to consider nonaqueous solvents. Among different possible options are deep eutectic solvents, which are cost‐effective and technologically relatively easy to implement. The present investigation reports for the first time an operando scanning soft X‐ray microscope analysis of the Zn behaviour in a choline–chloride/urea deep eutectic solvents electrolyte during the cathodic and anodic phase formation processes taking place in battery charge and discharge, providing a platform for in‐depth space–time dependent investigations of the chemistry of crystallites evolving during potential cycling. These operando measurements have been enabled by the construction of a novel wet cell, improving the design and filling protocol of earlier generation cells developed by authors.
High‐resolution soft X‐ray microscope images were acquired in two modes: (a) dynamic mode at a fixed beam energy, allowing to follow morphology evolution under electrochemical control and (b) static mode for selected morphologies representative of characteristic Zn growth and dissolution steps.
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Mar 2019
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[16407]
Open Access
Abstract: Biogas-energy is marginally profitable against the “parasitic” energy demands of processing biomass. Biogas involves microbial fermentation of feedstock hydrolyzate generated enzymatically or thermochemically. The latter also produces 5-hydroxymethyl furfural (5-HMF) which can be catalytically upgraded to 2, 5-dimethyl furan (DMF), a “drop in fuel.” An integrated process is proposed with side-stream upgrading into DMF to mitigate the “parasitic” energy demand. 5-HMF was upgraded using bacterially-supported Pd/Ru catalysts. Purpose-growth of bacteria adds additional process costs; Pd/Ru catalysts biofabricated using the sulfate-reducing bacterium (SRB) Desulfovibrio desulfuricans were compared to those generated from a waste consortium of acidophilic sulfidogens (CAS). Methyl tetrahydrofuran (MTHF) was used as the extraction-reaction solvent to compare the use of bio-metallic Pd/Ru catalysts to upgrade 5-HMF to DMF from starch and cellulose hydrolyzates. MTHF extracted up to 65% of the 5-HMF, delivering solutions, respectively, containing 8.8 and 2.2 g 5-HMF/L MTHF. Commercial 5% (wt/wt) Ru-carbon catalyst upgraded 5-HMF from pure solution but it was ineffective against the hydrolyzates. Both types of bacterial catalyst (5wt%Pd/3-5wt% Ru) achieved this, bio-Pd/Ru on the CAS delivering the highest conversion yields. The yield of 5-HMF from starch-cellulose thermal treatment to 2,5 DMF was 224 and 127 g DMF/kg extracted 5-HMF, respectively, for CAS and D. desulfuricans catalysts, which would provide additional energy of 2.1 and 1.2 kWh/kg extracted 5-HMF. The CAS comprised a mixed population with three patterns of metallic nanoparticle (NP) deposition. Types I and II showed cell surface-localization of the Pd/Ru while type III localized NPs throughout the cell surface and cytoplasm. No metallic patterning in the NPs was shown via elemental mapping using energy dispersive X-ray microanalysis but co-localization with sulfur was observed. Analysis of the cell surfaces of the bulk populations by X-ray photoelectron spectroscopy confirmed the higher S content of the CAS bacteria as compared to D. desulfuricans and also the presence of Pd-S as well as Ru-S compounds and hence a mixed deposit of PdS, Pd(0), and Ru in the form of various +3, +4, and +6 oxidation states. The results are discussed in the context of recently-reported controlled palladium sulfide ensembles for an improved hydrogenation catalyst.
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May 2019
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[20900]
Open Access
Abstract: We report on the detection of primordial organic matter within the carbonaceous chondrite Maribo that is distinct from the majority of organics found in extraterrestrial samples. We have applied high-spatial resolution techniques to obtain C-N isotopic compositions, chemical, and structural information of this material. The organic matter is depleted in 15N relative to the terrestrial value at around δ15N ~ -200‰, close to compositions in the local interstellar medium. Morphological investigations by electron microscopy revealed that the material consists of µm- to sub-µm-sized diffuse particles dispersed within the meteorite matrix. Electron energy loss and synchrotron X-ray absorption near-edge structure spectroscopies show that the carbon functional chemistry is dominated by aromatic and C=O bonding environments similar to primordial organics from other carbonaceous chondrites. The nitrogen functional chemistry is characterized by C-N double and triple bonding environments distinct from what is usually found in 15N-enriched organics from aqueously altered carbonaceous chondrites. Our investigations demonstrate that Maribo represents one of the least altered CM chondrite breccias found to date and contains primordial organic matter, probably originating in the interstellar medium.
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Nov 2020
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I08-Scanning X-ray Microscopy beamline (SXM)
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Matthew
Loxham
,
Jeongmin
Woo
,
Akul
Singhania
,
Natalie P.
Smithers
,
Alison
Yeomans
,
Graham
Packham
,
Alina M.
Crainic
,
Richard B.
Cook
,
Flemming R.
Cassee
,
Christopher H.
Woelk
,
Donna E.
Davies
Diamond Proposal Number(s):
[17801]
Open Access
Abstract: Airborne particulate matter (PM) is a leading cause of mortality and morbidity. However, understanding of the range and mechanisms of effects of PM components is poor. PM generated in underground railways is rich in metals, especially iron. In the ultrafine (UFPM; <0.1 μm diameter) fraction, the combination of small size and metal enrichment poses an unknown health risk. This study aimed to analyse transcriptomic responses to underground UFPM in primary bronchial epithelial cells (PBECs), a key site of PM deposition. The oxidation state of iron in UFPM from an underground station was determined by X-ray absorption near edge structure (XANES) spectroscopy. Antioxidant response was assayed using a reporter cell line transfected with an antioxidant response element (ARE)-luciferase construct. Differentiated PBECs were exposed to UFPM for 6 h or 24 h for RNA-Seq and RT-qPCR analysis. XANES showed predominance of redox-active Fe3O4, with ROS generation confirmed by induction of ARE-luciferase expression. 6 h exposure of PBECs to UFPM identified 52 differentially expressed genes (DEGs), especially associated with epithelial maintenance, whereas 24 h exposure yielded 23 DEGs, particularly involved with redox homeostasis and metal binding. At both timepoints, there was upregulation of members of the metallothionein family, low molecular weight proteins with antioxidant activity whose main function is binding and homeostasis of zinc and copper ions, but not iron ions. This upregulation was partially inhibited by metal chelation or ROS scavenging. These data suggest differential regulation of responses to metal-rich UFPM depending on exposure period, and highlight novel pathways and markers of PM exposure, with the role of metallothioneins warranting further investigation
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Apr 2020
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[15230]
Open Access
Abstract: Background: Neuromelanin-pigmented neurons, which are highly susceptible to neurodegeneration in the Parkinson’s disease substantia nigra, harbour elevated iron levels in the diseased state. Whilst it is widely believed that neuronal iron is stored in an inert, ferric form, perturbations to normal metal homeostasis could potentially generate more reactive forms of iron capable of stimulating toxicity and cell death. However, non-disruptive analysis of brain metals is inherently challenging, since use of stains or chemical fixatives, for example, can significantly influence metal ion distributions and/or concentrations in tissues. Aims: The aim of this study was to apply synchrotron soft x-ray spectromicroscopy to the characterisation of iron deposits and their local environment within neuromelanin-containing neurons of Parkinson’s disease substantia nigra. Methods: Soft x-ray spectromicroscopy was applied in the form of Scanning Transmission X-ray Microscopy (STXM) to analyse resin-embedded tissue, without requirement for chemically disruptive processing or staining. Measurements were performed at the oxygen and iron K-edges in order to characterise both organic and inorganic components of anatomical tissue using a single label-free method. Results: STXM revealed evidence for mixed oxidation states of neuronal iron deposits associated with neuromelanin clusters in Parkinson’s disease substantia nigra. The excellent sensitivity, specificity and spatial resolution of these STXM measurements showed that the iron oxidation state varies across sub-micron length scales. Conclusions: The label-free STXM approach is highly suited to characterising the distributions of both inorganic and organic components of anatomical tissue, and provides a proof-of-concept for investigating trace metal speciation within Parkinson’s disease neuromelanin-containing neurons.
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May 2020
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I08-Scanning X-ray Microscopy beamline (SXM)
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Open Access
Abstract: Soils act as a major sink for atmospheric carbon (C) and, correctly managed, can help counterbalance the excessive CO2 emissions. Organic C in soils can be physically stabilized and ‘hidden’ from its decomposers within soil aggregates and it is thought that soil fungi play a decisive role in “gluing together” and redistributing soil mineral particles and existing organic matter to form them (M. W. I. Schmidt et al., Nature 478(7367), 49–56, 2011). A significant contribution to the early aggregation process is adsorption of fungal exudates to the reactive surfaces of mineral particles. To uncover the mechanisms of C stabilization processes and to be able to increase the C sink potential of our soils, we need a deepened understanding of which fungi play key roles in the process, what mineral properties promote it, and what type of fungal exudates are involved.
For this purpose, we have grown saprotrophic and symbiotic (both arbuscular mycorrhizal (AM) and ectomycorrhizal (EM)) fungi under sterile conditions in contact with different principal soil components: quartz, goethite and muscovite, on top of X-ray transparent silicon nitride membrane windows and analyzed fungal hyphae by high lateral resolution synchrotron based scanning transmission X-ray microscopy (STXM) in combination with near edge X-ray fine structure (NEXAFS) spectroscopy at absorption edges of C(K), K(L), N(K) and Fe(L). We performed our experiments in the SM beamline at Canadian Light Source, Saskatoon, Canada and I08 beamline at Diamond Light Source, Oxfordshire, UK. In the resultant chemical images, we were able to differentiate the mostly proteinaceous hyphal material, the exudate layer constituting of mixtures of polysaccharides and proteins, and the organo-mineral interfaces consisting of a higher protein and carboxyl to sugar ratio than in the exudate layer. We also observed heterogeneous distributions of the exudate materials around the fungal hypha, indicating presence of exudation channels in the cell wall. Finally, we specifically analyzed NEXAFS spectra at Fe(L) absorption edge of goethite containing samples and were able to show changes in iron speciation in the mineral particles that were in contact with the fungal exudates. These results provide us with better insights to both nanoscale processes of fungal exudation and their role in the formation of organo-mineral interfaces subsequently responsible for soil aggregation.
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Mar 2020
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[17801, 17203]
Abstract: The good biocompatibility and corrosion resistance of the bulk CoCrMo alloy has resulted in it being used in the manufacture of implants and load bearing medical devices. These devices, however, can release wear and corrosion products which differ from the composition of the bulk CoCrMo alloy. The physicochemical characteristics of the particles and the associated in vivo reactivity are dictated by the wear mechanisms and electrochemical conditions at the sites of material loss. Debris released from CoCrMo hip bearings, taper junctions, or cement–stem interfaces can, therefore, have different chemical and morphological characteristics, which provide them with different in vivo toxicities. Here, we propose to assess and compare the characteristics of the particles released in vivo from CoCrMo tapers and cement–stem interfaces which have received less attention compared to debris originating from the hip bearings. The study uses state‐of‐art characterization techniques to provide a detailed understanding of the size, morphology, composition, and chemistry of the particles liberated from the wear and corrosion flakes from revised hip replacements, with an enzymatic treatment. The phase analyses identified Cr2O3 nanoparticles released from tapers and cement–stem interfaces, whose composition did not vary with origin or particle morphology. The size distributions showed significantly smaller particles were released from the stems, compared to the particles originating from the corresponding tapers. The investigation demonstrates that the tribocorrosive processes occurring at the taper and stem interfaces both result in Cr2O3 nanoparticle formation.
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Jun 2020
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[19228, 23583]
Open Access
Abstract: X-ray Raman scattering (XRS) spectroscopy is an emerging inelastic scattering technique which uses hard X-rays to study the X-ray absorption edges of low-Z elements (e.g. C, N, O) in bulk. This study applies XRS spectroscopy to pyrolysis and hydrothermal carbons. These materials are thermochemically-produced carbon from renewable resources and represent a route for the sustainable production of carbon materials for many applications. Results confirm local structural differences between biomass-derived (Oak, Quercus Ilex) pyrolysis and hydrothermal carbon. In comparison with NEXAFS, XRS spectroscopy has been shown to be more resilient to experimental artefacts such as self-absorption. Density functional theory XRS calculations of potential structural sub-units confirm that hydrothermal carbon is a highly disordered carbon material formed principally of furan units linked by the α carbon atoms. Comparison of two pyrolysis temperatures (450 °C and 650 °C) shows the development of an increasingly condensed carbon structure. Based on our results, we have proposed a semi-quantitative route to pyrolysis condensation.
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Jul 2020
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I08-Scanning X-ray Microscopy beamline (SXM)
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Open Access
Abstract: This study explores the delivery of phosphorus to the upper atmospheres of Earth, Mars, and Venus via the ablation of cosmic dust particles. Micron-size meteoritic particles were flash heated to temperatures as high as 2900 K in a Meteor Ablation Simulator (MASI), and the ablation of PO and Ca recorded simultaneously by laser induced fluorescence. Apatite grains were also ablated as a reference. The speciation of P in anhydrous chondritic porous Interplanetary Dust Particles was made by K-edge X-ray absorption near edge structure (XANES) spectroscopy, demonstrating that P mainly occurs in phosphate-like domains. A thermodynamic model of P in a silicate melt was then developed for inclusion in the Leeds Chemical Ablation Model (CABMOD). A Regular Solution model used to describe the distribution of P between molten stainless steel and a multicomponent slag is shown to provide the most accurate solution for a chondritic-composition, and reproduces satisfactorily the PO ablation profiles observed in the MASI. Meteoritic P is moderately volatile and ablates before refractory metals such as Ca; its ablation efficiency in the upper atmosphere is similar to Ni and Fe. The speciation of evaporated P depends significantly on the oxygen fugacity, and P should mainly be injected into planetary upper atmospheres as PO2, which will then likely undergo dissociation to PO (and possibly P) through hyperthermal collisions with air molecules. The global P ablation rates are estimated to be 0.017 t d−1 (tonnes per Earth day), 1.15 × 10−3 t d−1 and 0.024 t d−1 for Earth, Mars and Venus, respectively.
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Apr 2020
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I08-Scanning X-ray Microscopy beamline (SXM)
I10-Beamline for Advanced Dichroism
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Open Access
Abstract: Atypical low-oxidation-state iron phases in Alzheimer’s disease (AD) pathology are implicated in disease pathogenesis, as they may promote elevated redox activity and convey toxicity. However, the origin of low-oxidation-state iron and the pathways responsible for its formation and evolution remain unresolved. Here we investigate the interaction of the AD peptide β-amyloid (Aβ) with the iron storage protein ferritin, to establish whether interactions between these two species are a potential source of low-oxidation-state iron in AD. Using X-ray spectromicroscopy and electron microscopy we found that the co-aggregation of Aβ and ferritin resulted in the conversion of ferritin’s inert ferric core into more reactive low-oxidation-states. Such findings strongly implicate Aβ in the altered iron handling and increased oxidative stress observed in AD pathogenesis. These amyloid-associated iron phases have biomarker potential to assist with disease diagnosis and staging, and may act as targets for therapies designed to lower oxidative stress in AD tissue.
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Jun 2020
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