B18-Core EXAFS
I18-Microfocus Spectroscopy
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Nigel
Cook
,
Barbara
Etschmann
,
Cristiana
Ciobanu-cook
,
Tina
Geraki
,
Daryl
Howard
,
Timothy
Williams
,
Nick
Rae
,
Allan
Pring
,
Guorong
Chen
,
Bernt
Johannessen
,
Joel
Brugger
Diamond Proposal Number(s):
[7563]
Open Access
Abstract: The distribution and substitution mechanism of Ge in the Ge-rich sphalerite from the Tres Marias Zn deposit, Mexico, was studied using a combination of techniques at micro m- to atomic scales. Trace element mapping by Laser Ablation Inductively Coupled Mass Spectrometry shows that Ge is enriched in the same bands as Fe, and that Ge-rich sphalerite also contains measurable levels of several other minor elements, including As, Pb and Tl. Micron- to nanoscale heterogeneity in the sample, both textural and compositional, is revealed by investigation using Focused Ion Beam-Scanning Electron Microscopy (FIB-SEM) combined with Synchrotron X-ray Fluorescence mapping and High-Resolution Transmission Electron Microscopy imaging of FIB-prepared samples. Results show that Ge is preferentially incorporated within Fe-rich sphalerite with textural complexity finer than that of the microbeam used for the X-ray Absorption Near Edge Structure (XANES) measurements. Such heterogeneity, expressed as intergrowths between 3C sphalerite and 2H wurtzite on [11¯0] zones, could be the result of either a primary growth process, or alternatively, polystage crystallization, in which early Fe-Ge-rich sphalerite is partially replaced by Fe-Ge-poor wurtzite. FIB-SEM imaging shows evidence for replacement supporting the latter. Transformation of sphalerite into wurtzite is promoted by (111)* twinning or lattice-scale defects, leading to a heterogeneous ZnS sample, in which the dominant component, sphalerite, can host up to ~20% wurtzite. Ge K-edge XANES spectra for this sphalerite are identical to those of the germanite and argyrodite standards and the synthetic chalcogenide glasses GeS2 and GeSe2, indicating the Ge formally exists in the tetravalent form in this sphalerite. Fe K-edge XANES spectra for the same sample indicate that Fe is present mainly as Fe2+, and Cu K-edge XANES spectra are characteristic for Cu+. Since there is no evidence for coupled substitution involving a monovalent element, we propose that Ge4+ substitutes for (Zn2+, Fe2+) with vacancies in the structure to compensate for charge balance. This study shows the utility of synchrotron radiation combined with electron beam micro-analysis in investigating low-level concentrations of minor metals in common sulfides.
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Mar 2015
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B18-Core EXAFS
I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[7452, 5576, 3771, 6300]
Abstract: Europium LIII-edge X-ray absorption near edge structure (XANES) spectra were recorded for a series of synthetic glasses and melts equilibrated over a range of oxygen fugacities (fO2s, from -14 to +6 logarithmic units relative to the quartz-fayalite-magnetite, QFM, buffer) and temperatures (1250 – 1500 °C). Eu3+/ΣEu (where ΣEu = Eu2+ + Eu3+) values were determined from the spectra with a precision of ±0.015. Eu3+/ΣEu varies systematically with fO2 from 0 to 1 over the range studied, increases with decreasing melt polymerisation and temperature, and can be described by the empirical equation: Eu3+/ΣEu = 1/[1+10^(-0.25*logfO2 - 6410/T - 14.2Λ - 10.1)], where Λ is
the optical basicity of the melt and T is the temperature in K. Eu3+/ΣEu in glasses and melts equilibrated at the
same conditions are in excellent agreement for Fe-free systems. For Fe-bearing compositions the reaction
Eu2+ + Fe3+= Eu3+ + Fe2+ occurs during quenching to a glass and the high temperature value of Eu3+/ΣEu
is not preserved on cooling; in situ measurements are essential for determining Eu3+/ΣEu in natural melts.
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Jul 2015
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B18-Core EXAFS
I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[11293, 8861]
Open Access
Abstract: The mechanism of the Brust-Schiffrin gold nanoparticle synthesis has been investigated through the use
of ion transfer voltammetry at the water|1,2-dichloroethane
(DCE) solution interface, combined with X-ray absorption fine structure
(XAFS) of the reaction between [AuCl4]-
and thiol (RSH) in homogeneous toluene (TL) solution. Ion transfer calculations indi-
cate the formation of [AuCl2]- at RSH:Au ratios from 0.2 – 2 with a time-dependent variation observed over several days. At RSH:Au ratios above 2 and after time periods greater than 24 hours, the formation of Au(I)SR is also observed. The relative concentrations of reaction products observed at the liquid/liquid interface are in excellent agreement with those observed by XAFS for the corresponding reaction in a single homogeneous phase. BH4- ion transfer reactions between water and DCE indicate that the reduction of [AuCl4]-
and/or [AuCl2]- to Au nanoparticles by BH4- proceeds in the bulk organic phase. On the other hand, BH4- was unable to reduce the insoluble [Au(I)SR]n species to Au nanoparticles. The number and size of the nanoparticles formed was dependent on the concentration ratio of
RSH:Au, as well as the experimental duration because of the competing
formation of the [Au(I)SR]n
precipitate. Higher concentrations of nanoparticles, with diameters of 1.0 – 1.5 nm, were formed at RSH:Au ratios from 1 to 2.
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Nov 2015
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B18-Core EXAFS
I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[9044, 9598, 9647]
Open Access
Abstract: A critical radiation damage assessment of the materials that will be present in a Geological
Disposal Facility (GDF) for radioactive waste is a priority for building a safety case. Detailed analysis
of the effects of high-energy
a
-particle damage in phyllosilicates such as mica is a necessity, as these
are model structures for both the clay-based backfill material and the highly sorbent components of a
crystalline host rock. The
a
-radiation stability of biotite mica [general formula:
K(Mg,Fe)3(Al,Si3O10)(F,OH)2
] has been investigated using the 5 MV tandem pelletron at the University of Manchester’s
Dalton Cumbrian Facility (DCF) and both the microfocus spectroscopy (I18) and core X
-ray absorption
spectroscopy (B18) beamlines at Diamond Light Source (U.K.). Microfocus X-ray diffraction
mapping has demonstrated extensive structural aberrations in the mica resulting from controlled exposure
to the focused
4He2+ ion (a-particle) beam. Delivered doses were comparable to
a-particle fluences
expected in the highly active, near-field of a GDF. At doses up to 6.77 displacements per atom (dpa)
in the region of highest particle fluence, biotite mica displays a heterogeneous structural response to
irradiation on a micrometer scale, with sequential dilation and contraction of regions of the structure
perpendicular to the sheets, as well as a general overall contraction of the phyllosilicate layer spacing.
At the peak of ion fluence, the structure collapses under a high point defect density and amorphous
areas are pervasive among altered domains of the original lattice. Such structural alterations are likely
to affect the material’s capacity to sorb and retain escaped radionuclides over long timescales; increased
edge site availability may favor increased sorption while interlayer uptake will likely be reduced due
to collapse. Radiation-induced reduction of structural iron at the region of highest structural damage
across an
a-particle’s track has been demonstrated by Fe
K-edge X-ray absorption near edge spectroscopy (XANES) and local structural disorder has been confirmed by analysis of both potassium
K-edge
XANES and Fe
K-edge extended X-ray absorption fine structure analysis. An infrared absorption study
of deformations in the OH–
stretching region, along with electron probe microanalysis complements
the synchrotron data presented here
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Apr 2016
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B18-Core EXAFS
I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[7326, 8045, 7325]
Abstract: The phyllomanganate birnessite is the main Mn-bearing phase in oxic marine sediments
where it exerts a primary control on the concentration of micronutrient trace metals in
seawater. However, during sediment diagenesis and under mild hydrothermal conditions
birnessite transforms into the tectomanganate todorokite. We have recently shown that the
transformation of birnessite to todorokite proceeds via a four-stage nucleation and growth
mechanism, beginning with todorokite nucleation, then crystal growth from solution to
form todorokite primary particles, followed by their self-assembly and oriented growth via
oriented attachment to form crystalline todorokite laths, culminating in traditional crystal
ripening (Atkins et al., 2014, GCA 144, 109-125). Here we determine the fate and
mobility of Ni sorbed by birnessite during this transformation process. Specifically, in our
recent work we predict that the presence of Ni within the phyllomanganate matrix will
disrupt the formation of todorokite primary particles. As such, contrary to current
understanding, we suggest that Ni sorbed by birnessite will slow the transformation of
birnessite to todorokite and/or be released to marine porewaters during sediment
diagenesis. Here we transform a synthetic, poorly crystalline, Ni-sorbed (~1 wt% Ni)
hexagonal birnessite, analogous to marine birnessite, into todorokite under a mild reflux
procedure, developed to mimic marine diagenesis and mild hydrothermal conditions. We
characterize our birnessite and reflux products as a time series, including X-ray diffraction
(XRD), high-resolution transmission electron microscopy (HR-TEM) and extended X-ray
absorption fine structure (EXAFS) spectroscopy. In addition we determine Ni speciation
and mineral phase associations in a suite of natural marine ferromanganese precipitates,
containing intermixed phyllomanganate and todorokite. Our work shows for the first time
that Ni significantly slows the transformation of birnessite to todorokite and reduces the
crystallinity of the neo-formed todorokite phase, but does not alter the mechanism and
pathway of todorokite formation, compared to a Ni-free system. Furthermore, in systems
tending towards todorokite as the final diagenetic product, we see that up to 50 % of the
Ni originally sequestered by birnessite is released to solution during the transformation.
Our work indicates that the transformation of birnessite to todorokite in oxic marine
sediments likely provides a significant source of Ni to marine sedimentary porewaters and
potentially a hitherto unrecognized benthic flux of Ni to seawater.
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Jun 2016
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B18-Core EXAFS
I18-Microfocus Spectroscopy
|
Diamond Proposal Number(s):
[9044, 9045, 9598, 9647, 10382, 11703]
Open Access
Abstract: The safety case for a proposed geological disposal facility (GDF) for radioactive wastes relies
upon a series of engineered and natural barrier systems to limit the migration of harmful
radionuclides into the geosphere over geological timescales. Natural minerals, dominantly
phyllosilicates, are expected to be the most reactive components of both the host rock and the
clay-based backfill surrounding the highly radioactive waste canisters for as long as 100,000
years. Upon eventual canister degradation, α-emitting radionuclides will leach into the backfill
material (and eventually beyond) and the constituent mineral systems will accumulate
radiation damage upon radionuclide uptake and/or surface precipitation. The following study
is an assessment of the structural and chemical effects caused by α-particle bombardment of
silicate minerals, as proxies for the radiation stability of natural materials present in the near
and far field of a GDF.
Microscopy and spectroscopy studies from naturally occurring radiation damage accumulated
in silicates over geological timescales (forming distinct ‘radiohaloes’) have shown that both
α-particle and α-recoil bombardment results in altered unit cell dimensions caused by the
accumulation of point (Frenkel) defects. In the example of highly damaged biotite, structural
breakdown through the reorientation of discrete lattice crystallites was observed; the
variability of the interlayer spacing within these regions reveal the potential for damaged mica
to adopt the structure of phyllosilicate breakdown products over geological time.
Controlled α-particle irradiation using the Dalton Cumbrian Facility’s 5 MV tandem pelletron
ion accelerator, combined with microfocus spectroscopy analysis has revealed the
mechanisms of high fluence α-radiation damage across 2:1 phyllosilicate minerals (biotite and
chlorite); reducing the layered structures into a series of loosely connected domains of
alternating lattice expansion and collapse. Radiation induced Fe redox changes have been
revealed, with Fe reduction apparent at relatively low α-particle doses, giving way to Fe
oxidation at high doses. A ‘redox gradient’, based on α-particle energy deposition through a
silicate structure has therefore been proposed. In addition, the increase in ‘edge’ sites
generated by structural deformation has been shown to be favourable for the adsorption of the
Se(IV) oxyanion to the mica surface.
Comprising a body of additional work, a core sample has been extracted from a spent nuclear
fuel pond wall at the decommissioned Hunterston A nuclear power station and the radioactive
contamination on the painted core surface has been analysed by microfocus spectroscopy. The
contaminant radiostrontium has been shown to be associated with the Ti rich pigment in the
surface paint, resulting in a ‘patchy’ accumulation of radioactivity at the core surface. In
addition, inert Cs reactivity experiments using the underlying concrete have shown that Cs is
preferentially uptaken by phyllosilicates within the altered mafic clasts used in the concrete
aggregate.
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Sep 2015
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B18-Core EXAFS
I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[7683]
Open Access
Abstract: This thesis consists of three main
investigations
.
The first of these is a study of the
magnetic properties of Fe nanoparticles embedded in an Al matrix, with different
volume fraction. Both Fe nanoparticles, with a diameter of ̴ 2 nm, and the Al matrix
were deposited from the gas phase.
Th
e atomic
Fe
moment
of
the Fe nanoparticles
in Al
is
much less than
the
bulk Fe value because of considerable
alloying at the Fe
nanoparticle
and Al matrix interface. Two
important parameters
,
the exchange
field
(H
ex
) and random anisotropy
field
(H
r
)
,
were investigated using the Random Anisotropy
Model (RAM).
Fitting the data to this
model reveals that with increasing volume
filling
f
raction (VF
F
) of Fe
nanoparticles
in Al
, both H
ex
and H
r
show an increase,
with H
r
showing a more significant
increase
t
han
for H
ex
.
The second main investigation in this thesis is a study of structure and magnetism in Co
nanoparticles embedded in
antiferromagnetic
Cr.
Co K edge and
Cr
K edge extended x
-
ray absorption fine structure (EXAFS) experiments were performed in ord
er to
investigate atomic structure in the Cr
-
embedded Co nanoparticles and
Cr
matrix
respectively, whereas magnetism was investigated using
a
vibrating sample
magnetometer (VSM). The atomic structure of the Co nanoparticles is same as
the host
Cr matrix
(bcc)
,
although with a degree of disorder
, rather than the bulk Co hcp
structure.
The net Co moment per atom in the Co/Cr nanocomposite films is
significantly lower than bulk
Co
value, and decreases as the proportion of Co
nanoparticles in the film is decr
eased; for the sample with the most dilute concentration
of Co nanoparticles (4.9% by volume), the net Co moment was 0.18
μ
B
/atom.
Both the
struc
tural and magnetic results show
that there is a degree of alloying at the
nanoparticle/matrix interface, leadin
g to a core/shell structure in the embedded
nanoparticles consisting of an antiferromagnetic CoCr alloy shell surrounding a reduced
ferromagnetic Co core.
The final part of this work is an investigation into the structure and magnetism of Fe
nanoparticles
embedded in a Cu
1
-
x
Al
x
alloy matrix, where the structure of the matrix
could be controlled by control over its composition.
Cu K edge
EXAFS
measurements
show that there is a slight stretch in the Cu
-
Cu interatomic distances in the alloy matrix
,
while the
face centred structure in the Cu
1
-
x
Al
x
matrix is maintained
,
as the Al
-
content is
increased
. Fe K edge
EXAFS measurement
s
reveal that for low Al
-
content in the Cu
1
-
x
Al
x
matrix
,
Fe nanoparticles have both fcc and bcc structures, but for
higher
Al
-
content
the structure of Fe nanoparticles
is
consistent with bcc. The magnetism measurement
s,
obtained from VSM and SQUID magnetometer
s
,
show that the Fe atomic moment
increases sharply due to the increasing proportion of bcc Fe nanoparticles. However for
Al
-
conte
nt higher than 0.13, the net atomic moment value of Fe decreases slightly
,
which is consistent with a
high degree of alloying between Fe and Al atoms.
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Jul 2016
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B18-Core EXAFS
I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[11865]
Abstract: Endochondral ossification is the process by which bone is deposited during development, growth and repair of the skeleton. The regulation of endochondral ossification is extremely important as developmental flaws can result in severe skeletal abnormalities. However, until recently the limitations of available methodologies have restricted our understanding of this fundamental physiological process. The analysis of chemical elements that are intimately associated with discrete biochemical stages of ossification within bone could provide new insight to such processes at the atomic level. In this study we present detailed characterisation of the elemental inventory within actively ossifying bone during development in mice using synchrotron microfocus X-ray techniques. X-ray fluorescence imaging showed differential distributions of Zn, Sr and Ca, which may be correlated with the processes of cartilage replacement (Zn), active ossification (Sr) and fully ossified tissues (Ca). Quantification of these trace elements confirmed their relative distributions. These results represent the first detailed visualisation of local endochondral ossification processes using trace elemental mapping. Such studies have far reaching applications not only in the medical field, but to our understanding of the evolution of the bony skeleton given that trace element inventories have been shown to be preserved through deep time (millions of years).
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Mar 2017
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B18-Core EXAFS
I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[519513, 520053]
Abstract: The solubility of uranium and thorium has been measured under the conditions anticipated in a cementitious, geological disposal facility for low and intermediate level radioactive waste. Similar solubilities were obtained for thorium in all media, comprising NaOH, Ca(OH)2 and water equilibrated with a cement designed as repository backfill (NRVB, Nirex Reference Vault Backfill). In contrast, the solubility of U(VI) was one order of magnitude higher in NaOH than in the remaining solutions. The presence of cellulose degradation products (CDP) results in a comparable solubility increase for both elements. Extended X-ray Absorption Fine Structure (EXAFS) data suggest that the solubility-limiting phase for uranium corresponds to a becquerelite-type solid whereas thermodynamic modelling predicts a poorly crystalline, hydrated calcium uranate phase. The solubility-limiting phase for thorium was ThO2 of intermediate crystallinity. No breakthrough of either uranium or thorium was observed in diffusion experiments involving NRVB after three years. Nevertheless, backscattering electron microscopy and microfocus X-ray fluorescence confirmed that uranium had penetrated about 40 μm into the cement, implying active diffusion governed by slow dissolution-precipitation kinetics. Precise identification of the uranium solid proved difficult, displaying characteristics of both calcium uranate and becquerelite.
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Mar 2017
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B18-Core EXAFS
I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[9151, 10429]
Abstract: Excessive metal deposition in soil is of major concern to the environment due to the toxicity of metals to animals and plants. Since metals do not degrade, reducing risk of exposure relies in either removing the metals from soil, or changing their speciation which leads to changes in bioavailability, mobility and toxicity. Plants have been shown to provide a cheap alternative to chemical methods for both removing and changing metal speciation, particularly when augmented with plant growth promoting bacteria. The focus of this thesis was to investigate whether the form (speciation) in which a metal contaminant is introduced to soil affects both plant health and the efficiency of metal remediation by the plant, using the well-known hyperaccumulator Brassica juncea (L.) Czern and zinc (Zn) as the metal contaminant. This study also examined the role of plant growth promoting bacteria in changing metal speciation, impact on metal toxicity and phytoremediation efficiency. Brassica juncea was grown in pots containing soil spiked with equal amounts (600 mg Zn kg-1) of soluble Zn (ZnSO4) and nanoparticulate ZnS and ZnO. Plant height, number of leaves, root length, plant biomass and chlorophyll content of Brassica juncea were used to assess Zn toxicity. Zn localisation and speciation in soil and plant tissues was studied using transmission electron microscopy (TEM), synchrotron micro-X-ray fluorescence elemental mapping (μXRF) and synchrotron X-ray absorption spectroscopy (XAS). Growth parameters showed that ZnSO4 was the most toxic form of Zn whilst ZnS and ZnO effects were not statistically different. These differences were linked to differences in Zn content in root and shoot biomass, which was higher in ZnSO4 treatments. Inoculation with Rhizobium leguminosarum and Pseudomonas brassicacearum enhanced plant growth, Zn concentration in plant biomass and translocation of Zn in all Zn treatments. XAS analysis showed that Zn speciation was altered in roots of plants inoculated with bacteria, with Zn cysteine as the most dominant form of Zn in all inoculated Zn treatments, suggesting a role for cysteine in ameliorating Zn toxicity. By also assessing Zn speciation changes across the soilrhizosphere- plant interface, this study established that Rhizobium leguminosarum modified Zn speciation at the rhizosphere. Through this thesis work, metal speciation is a major factor in determining the efficiency of metal phytoremediation and plant tolerance. Hence, this research provides useful information on Zn speciation which will contribute to effective implementation of Zn phytoremediation.
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Mar 2017
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