I20-Scanning-X-ray spectroscopy (XAS/XES)
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Jingming
Zhao
,
Ying
Zhuo
,
Daniel E.
Diaz
,
Muralidharan
Shanmugam
,
Abbey J.
Telfer
,
Peter J.
Lindley
,
Daniel
Kracher
,
Takahiro
Hayashi
,
Lisa S.
Seibt
,
Florence J.
Hardy
,
Oliver
Manners
,
Tobias M.
Hedison
,
Katherine A.
Hollywood
,
Reynard
Spiess
,
Kathleen M.
Cain
,
Sofia
Diaz-Moreno
,
Nigel S.
Scrutton
,
Morten
Tovborg
,
Paul H.
Walton
,
Derren J.
Heyes
,
Anthony P.
Green
Diamond Proposal Number(s):
[28477]
Open Access
Abstract: Oxygenase and peroxygenase enzymes generate intermediates at their active sites which bring about the controlled functionalization of inert C–H bonds in substrates, such as in the enzymatic conversion of methane to methanol. To be viable catalysts, however, these enzymes must also prevent oxidative damage to essential active site residues, which can occur during both coupled and uncoupled turnover. Herein, we use a combination of stopped-flow spectroscopy, targeted mutagenesis, TD-DFT calculations, high-energy resolution fluorescence detection X-ray absorption spectroscopy, and electron paramagnetic resonance spectroscopy to study two transient intermediates that together form a protective pathway built into the active sites of copper-dependent lytic polysaccharide monooxygenases (LPMOs). First, a transient high-valent species is generated at the copper histidine brace active site following treatment of the LPMO with either hydrogen peroxide or peroxyacids in the absence of substrate. This intermediate, which we propose to be a CuII–(histidyl radical), then reacts with a nearby tyrosine residue in an intersystem-crossing reaction to give a ferromagnetically coupled (S = 1) CuII–tyrosyl radical pair, thereby restoring the histidine brace active site to its resting state and allowing it to re-enter the catalytic cycle through reduction. This process gives the enzyme the capacity to minimize damage to the active site histidine residues “on the fly” to increase the total turnover number prior to enzyme deactivation, highlighting how oxidative enzymes are evolved to protect themselves from deleterious side reactions during uncoupled turnover.
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Sep 2023
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I20-Scanning-X-ray spectroscopy (XAS/XES)
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Diamond Proposal Number(s):
[19013]
Open Access
Abstract: The oxygen storage capacity of ceria-based catalytic materials is influenced by their size, morphology, and surface structure, which can be tuned using surfactant-mediated synthesis. In particular, the cuboidal morphology exposes the most reactive surfaces; however, when the capping agent is removed, the nanocubes can agglomerate and limit the available reactive surface. Here, we study ceria nanocubes, lanthanum-doped ceria nanocubes, and ceria nanocubes embedded inside a highly porous silica aerogel by high-energy resolution fluorescence detection─X-ray absorption near edge spectroscopy at the Ce L3 edge. In situ measurements showed an increased reversibility of redox cycles in ceria nanocubes when embedded in the aerogel, demonstrating enhanced reactivity due to the retention of reactive surfaces. These aerogel nanocomposites show greater improvement in the redox capacity and increased thermal stability of this catalytic material compared to the surfactant-capped nanocubes. Ex situ measurements were also performed to study the effect of lanthanum doping on the cerium oxidation state in the nanocubes, indicating a higher proportion of Ce4+ compared to that of the undoped ceria nanocubes.
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Sep 2023
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I20-Scanning-X-ray spectroscopy (XAS/XES)
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Diamond Proposal Number(s):
[30309]
Open Access
Abstract: Understanding the effects of high energy neutron damage on REBa2Cu3O$_{7-\delta}$ (REBCO) coated conductor is of vital importance for the design of the magnetic confinement systems for compact nuclear fusion power plants. However, neutron irradiation campaigns can only be carried out in a few facilities, and the experiments are very slow and expensive partly because the samples become radioactive. Ion irradiation provides an easily accessible alternative route to studying the effects of radiation on high temperature superconductors, which not only increases the volume of technical data that can be obtained but also enables more complex experiments such as in situ cryogenic irradiation. The question is, does ion damage offer a good proxy for neutrons? Here we use high energy resolution fluorescence detected x-ray absorption spectroscopy to probe the effects of fast neutron irradiation on the local environment around the copper ions in the REBCO layer of coated conductor tapes. We find that the spectral changes are similar to those induced by helium ion irradiation, suggesting that both projectiles produce the same types of structural defect in the REBCO lattice, although there is some evidence of an additional type of defect present in the sample heavily damaged by He+ ion irradiation. It is also shown that the linear degradation of superconducting transition temperature (Tc) of coated conductors with the calculated number of displacements per atom occurs at the same rate for neutrons and helium ions. Together these results provide new evidence suggesting that helium ions can emulate neutron point defect damage in REBCO high temperature superconductor reasonably well, increasing confidence that helium ions could be used as a useful proxy for neutrons in future experiments.
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Aug 2023
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I20-Scanning-X-ray spectroscopy (XAS/XES)
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Kelsi R.
Hall
,
Chris
Joseph
,
Iván
Ayuso-Fernández
,
Ashish
Tamhankar
,
Lukas
Rieder
,
Rannei
Skaali
,
Ole
Golten
,
Frank
Neese
,
Åsmund K.
Røhr
,
Sergio A. V.
Jannuzzi
,
Serena
Debeer
,
Vincent G. H.
Eijsink
,
Morten
Sørlie
Diamond Proposal Number(s):
[28433]
Open Access
Abstract: Lytic polysaccharide monooxygenases (LPMOs) are powerful monocopper enzymes that can activate strong C–H bonds through a mechanism that remains largely unknown. Herein, we investigated the role of a conserved glutamine/glutamate in the second coordination sphere. Mutation of the Gln in NcAA9C to Glu, Asp, or Asn showed that the nature and distance of the headgroup to the copper fine-tune LPMO functionality and copper reactivity. The presence of Glu or Asp close to the copper lowered the reduction potential and decreased the ratio between the reduction and reoxidation rates by up to 500-fold. All mutants showed increased enzyme inactivation, likely due to changes in the confinement of radical intermediates, and displayed changes in a protective hole-hopping pathway. Electron paramagnetic resonance (EPR) and X-ray absorption spectroscopic (XAS) studies gave virtually identical results for all NcAA9C variants, showing that the mutations do not directly perturb the Cu(II) ligand field. DFT calculations indicated that the higher experimental reoxidation rate observed for the Glu mutant could be reconciled if this residue is protonated. Further, for the glutamic acid form, we identified a Cu(III)-hydroxide species formed in a single step on the H2O2 splitting path. This is in contrast to the Cu(II)-hydroxide and hydroxyl intermediates, which are predicted for the WT and the unprotonated glutamate variant. These results show that this second sphere residue is a crucial determinant of the catalytic functioning of the copper-binding histidine brace and provide insights that may help in understanding LPMOs and LPMO-inspired synthetic catalysts.
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Aug 2023
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I20-Scanning-X-ray spectroscopy (XAS/XES)
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Anokhi
Shah
,
Michael J.
Taylor
,
Giulia
Molinaro
,
Sellamuthu
Anbu
,
Margaux
Verdu
,
Lucy
Jennings
,
Iuliia
Mikulska
,
Sofia
Diaz-Moreno
,
Hassane
El Mkami
,
Graham M.
Smith
,
Melanie M.
Britton
,
Janet E.
Lovett
,
Anna F. A.
Peacock
Diamond Proposal Number(s):
[18941]
Open Access
Abstract: We report the preparation and spectroscopic characterization of a highly elusive copper site bound exclusively to oxygen donor atoms within a protein scaffold. Despite copper generally being considered unsuitable for use in MRI contrast agents, which in the clinic are largely Gd(III) based, the designed copper coiled coil displays relaxivity values equal to, or superior than, those of the Gd(III) analog at clinical field strengths. The creation of this new-to-biology proteinaceous CuOx-binding site demonstrates the power of the de novo peptide design approach to access chemistry for abiological applications, such as for the development of MRI contrast agents.
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Jul 2023
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I20-Scanning-X-ray spectroscopy (XAS/XES)
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Abstract: Carbon-supported single metal atoms coordinated to nitrogen have recently emerged as efficient electrocatalysts for the electrochemical CO2 reduction reaction (CO2RR) to CO; although the presence of aggregated metallic species can decrease Faradaic efficiency, catalyst utilization and promote the hydrogen evolution reaction. In this work, we employ our recent synthetic protocol for producing single and dual Fe atoms in a high surface area C2N-derived nitrogen-doped carbon and test the catalysts for CO2 reduction. The higher resolution of the X-ray absorption spectroscopy that we employed herein, relative to our previous report, allowed us to more accurately pinpoint the dominant site as pentacoordinated Fe single atoms. The material displays high active site utilization of 25.1 ± 1.2% (based on in situ nitrite stripping experiments). Additionally, a Faradaic efficiency of 98% for the CO2RR to CO was obtained, with a turnover frequency of 2.5 e− site−1 s−1, at -0.56 V vs a reversible hydrogen electrode (RHE); on par with state-of-the-art Au catalysts.
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Jul 2023
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I20-Scanning-X-ray spectroscopy (XAS/XES)
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Diamond Proposal Number(s):
[19229]
Open Access
Abstract: Chemical vapor synthesis (CVS) is a gas phase process to generate nanoparticles via a chemical reaction. In this contribution a review of recent methodological advances is provided using nanocrystalline iron oxides as model system. Novel methods are described to control precursor flow of sublimating metalorganic solids, characterization of electronic and molecular structure of vapors using X-ray absorption spectroscopy (XAS), in situ determination of oxygen partial pressure, variation of the time-temperature profile, in situ characterization of electronic, local, crystal and micro-structure using XAS, wide and small angle scattering (WAXS and SAXS) and finally methods to design the CVS process and materials development.
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Jul 2023
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I20-Scanning-X-ray spectroscopy (XAS/XES)
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Diamond Proposal Number(s):
[25625]
Open Access
Abstract: The discovery of a new physical process in manganese metal is reported. This process will also be present for all manganese-containing materials in condensed matter. The process was discovered by applying our new technique of XR-HERFD (extended-range high-energy-resolution fluorescence detection), which was developed from the popular high-resolution RIXS (resonant inelastic X-ray scattering) and HERFD approaches. The acquired data are accurate to many hundreds of standard deviations beyond what is regarded as the criterion for `discovery'. Identification and characterization of many-body processes can shed light on the X-ray absorption fine-structure spectra and inform the scientist on how to interpret them, hence leading to the ability to measure the dynamical nanostructures which are observable using the XR-HERFD method. Although the many-body reduction factor has been used universally in X-ray absorption spectroscopy in analysis over the past 30 years (thousands of papers per year), this experimental result proves that many-body effects are not representable by any constant reduction factor parameter. This paradigm change will provide the foundation for many future studies and X-ray spectroscopy.
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May 2023
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I20-Scanning-X-ray spectroscopy (XAS/XES)
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Yue
Pang
,
Nils
Nöthling
,
Markus
Leutzsch
,
Liqun
Kang
,
Eckhard
Bill
,
Maurice
Van Gastel
,
Edward
Reijerse
,
Richard
Goddard
,
Lucas
Wagner
,
Daniel
Santalucia
,
Serena
Debeer
,
Frank
Neese
,
Josep
Cornella
Diamond Proposal Number(s):
[30449]
Abstract: Large Spin-Orbit Coupling (SOC) is an intrinsic property of the heavy-elements that directly affects the electronic structures of the compounds. Herein we report the synthesis and characterization of a mono-coordinate bismuthinidene featuring a rigid and bulky ligand. All magnetic measurements (SQUID, NMR) point to a diamagnetic compound. However, multiconfigurational quantum chemical calculations predict the ground state of the compound to be dominated (76%) by a spin-triplet. The apparent diamagnetism is explained by an extremely large SOC induced positive zero-field-splitting of more than 4500 cm−1 that leaves the MS = 0 magnetic sublevel thermally isolated in the electronic ground state.
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May 2023
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B18-Core EXAFS
I20-Scanning-X-ray spectroscopy (XAS/XES)
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Diamond Proposal Number(s):
[21441]
Abstract: In the UK, the decommissioning of legacy spent fuel storage facilities at the Sellafield nuclear facility requires the retrieval of radioactive sludge resulting from Magnox fuel corrosion. However, sludge retrievals may enhance uranium mobility including via sorption of radionuclide nanoparticles onto colloidal phases such as hydrotalcite (Mg4Al2(OH)16(CO3).4H2O). Hydrotalcite is a Mg-Al layered double hydroxide (LDH) which is a corrosion product of Magnox fuel cladding. Currently, there are a paucity of studies examining interactions between actinide nanoparticles and LDH phases such as hydrotalcite. Here, a multi-technique approach was used to investigate the interactions between colloidal hydrotalcite and three different forms of nanoparticulate U(IV): nanoparticulate uraninite (UO2); nanoparticulate UO2 reacted with silica (UO2-Si); and U(IV)-Si-coprecipitate under anoxic, neutral-to-alkaline conditions. Ultrafiltration and zeta potential analyses indicated that for UO2 and UO2-Si nanoparticulate phases, sorption to colloidal hydrotalcite was limited due to rapidly settling UO2 and UO2-Si aggregates (>450 nm). By contrast, ultrafiltration and zeta potential analyses confirmed the U(IV)-Si-coprecipitate nanoparticle phase showed significantly higher sorption to colloidal hydrotalcite. This was due to the increased colloidal stability of intrinsic U(IV)-silicate nanoparticles which in turn promoted increased sorption to hydrotalcite. TEM imaging showed some evidence for smaller UO2 and UO2-Si aggregates (<20 nm) sorbed to colloidal hydrotalcite. Similar behaviour was observed in TEM images of authentic pond effluent samples from Sellafield, providing confidence that the model laboratory experiments provided a bridge to the highly radioactive spent nuclear fuel pond interactions. This study highlights the potential for U(IV) nanoparticles to form a new type of colloid-colloid interaction with hydrotalcite, especially when silica is present. This further informs predictions of U(IV) (and An(IV)) behaviour in the legacy pond and silo environments, as well as in environmental scenarios where LDH mineral phases and silica are present (e.g. in geological disposal of radioactive waste).
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Apr 2023
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