I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[30183, 31026]
Open Access
Abstract: Samples of observed meteorite falls provide important constraints on alteration histories of Solar System materials. Due to its rapid collection, terrestrial alteration in the observed Mighei-type (CM) carbonaceous chondrite fall Winchcombe was minimal. In this work, the petrography and mineralogy of three Winchcombe lamellae, two from the matrix and one from a lithological clast, were analyzed by transmission electron microscopy. Our results demonstrate that the matrix of Winchcombe is dominated by Mg-Fe-rich serpentine-type phyllosilicates and tochilinite-cronstedtite intergrowth (TCI)-like phases with variable, but generally high (petrologic type 2.0–2.3) alteration degrees that agree with petrologic types acquired on TCIs on larger scales in other work. However, we also located pristine areas in investigated lamellae such as homogeneous amorphous silicates and glassy particles with sulfide and metal inclusions that resemble altered cometary GEMS (glass with embedded metal and sulfides). One distinct GEMS-like domain shows Fe-rich metal and sulfide grains with oxygen-enriched rims in a Mg-rich amorphous groundmass embedded in organic matter, which likely shielded it from more severe alteration. Fe-Ni-sulfides are mainly pentlandite and concentrated in matrix lamellae. In addition to the sub-μm scale brecciated texture, the three lamellae show different alteration extents, further demonstrating the complex alteration nature of this CM2 meteorite.
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Aug 2025
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I08-Scanning X-ray Microscopy beamline (SXM)
I14-Hard X-ray Nanoprobe
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Abstract: Renewable sources could replace hydrocarbons, but sustainability imposes the integration with reliable and efficient energy storage (EES) facilities like rechargeable batteries. The ssuccessful operation of rechargeable batteries depends on the concerted occurrence of an enormous number of physico-chemical, electrical, thermal and mechanical processes, taking place over wide spatial (nm - cm) and temporal (10-14s - hours) ranges. Disentangling this scenario, to gain control over their relative roles on practical operation, durability and safety, calls for the capability of imaging what happens inside batteries at length-scales ranging from material structure up to battery components at the device scale, and correlating this information with the electrical performance over time. This perspective implies joint efforts in three key directions: (i) the acquisition of focused in operando data, in real-life or close to real-life conditions; (ii) their multiscale modelling and (iii) integration of this information into electrical diagnostics and control tools. Synchrotron-based scanning nanoprobes can contribute crucially to point (i) and provide unique factual input for points (ii) and (iii). Wide range of novel electrochemical cells for in operando muti-modal spectro-microscopy are designed and these systems provide fundamental answers to technologically relevant questions raised by R&D on state-of-the art as well as next-generation lithium and post-lithium battery studies and developments. Among realistic cell configurations, both coin-cells and pouch cells with an optical window, featuring specially – but straightforwardly – shaped electrodes, can be used for in situ and in operando measurements.
Here, we present the current capabilities of the I14 and I08 beamlines at Diamond Light Source UK, which are in user operation mode, as well as give an outline of planned future upgrades. We describe our current instrumentation and software infrastructure, including an automated processing pipeline that provides users with a ptychographic reconstruction in near real time. We show results from a few scientific examples of in-operando and in-situ studies on batteries and catalysts samples using multi-modal X-ray Nanoprobes which allow the use of imaging and spectroscopy to access nanoscale chemical and structural information. Spectro-ptychography offers the unique capability to image in-operando electrochemical cells at high spatial resolution and with chemical specificity, further enhanced by the upcoming upgrade to Diamond II with an expected increase in coherent flux.
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Jul 2025
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I08-Scanning X-ray Microscopy beamline (SXM)
I14-Hard X-ray Nanoprobe
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Open Access
Abstract: Advances in X-ray nanoprobe beamlines at synchrotrons across the world present exciting opportunities for rich multimodal imaging of biomineral structures and their formation processes. The combination of techniques provides a sensitive probe of both chemistry and structure, making X-ray nanoprobes an important tool for investigating crystallite growth and orientations, interfaces and assembly of building blocks into hierarchical structures. A discussion of these capabilities is presented with reference to recent examples using a range of nanoprobe imaging techniques for investigating enamel structure, as well as coccolith properties. Key opportunities for the use of X-ray nanoprobes lie in exploiting the penetrating power and coherence properties of synchrotron X-rays in order to image in situ processes or apply coherent diffractive imaging techniques to obtain higher resolutions. To this end initial results demonstrating the observation of calcium phosphate mineralisation, in a liquid environment, using nano-X-ray fluorescence mapping are presented, and the role of X-ray dose and beam induced effects is considered. Finally novel results from tomographic ptychography imaging of a Mytilus Edulis mussel shell calcite prisms are discussed, where the segmentation of the phase density into organic and mineral content give insights into the mechanisms underlying mineral prism formation and the role of the organic matrix in biomineralisation.
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May 2025
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I08-Scanning X-ray Microscopy beamline (SXM)
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Rhiannon L.
Jones
,
Jon R.
Hawkings
,
Michael P.
Meredith
,
Maeve C.
Lohan
,
Oliver W.
Moore
,
Robert M.
Sherrell
,
Jessica N.
Fitzsimmons
,
Majid
Kazemian
,
Tohru
Araki
,
Burkhard
Kaulich
,
Amber L.
Annett
Diamond Proposal Number(s):
[30572, 32502]
Open Access
Abstract: Iron is an essential micronutrient for phytoplankton and plays an integral role in the marine carbon cycle. The supply and bioavailability of iron are therefore important modulators of climate over glacial-interglacial cycles. Inputs of iron from the Antarctic continental shelf alleviate iron limitation in the Southern Ocean, driving hotspots of productivity. Glacial meltwater fluxes can deliver high volumes of particulate iron. Here, we show that glacier meltwater provides particles rich in iron(II) to the Antarctic shelf surface ocean. Particulate iron(II) is understood to be more bioavailable to phytoplankton, but less stable in oxic seawater, than iron(III). Using x-ray microscopy, we demonstrate co-occurrence of iron and organic carbon-rich phases, suggesting that organic carbon retards the oxidation of potentially-bioavailable iron(II) in oxic seawater. Accelerating meltwater fluxes may provide an increasingly important source of bioavailable iron(II)-rich particles to the Antarctic surface ocean, with implications for the Southern Ocean carbon pump and ecosystem productivity.
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May 2025
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[14784]
Open Access
Abstract: Silicified peritidal carbonates of the Tonian Draken Formation, Spitsbergen, contain highly diverse and well-preserved microfossil assemblages dominated by filamentous microbial mats, but also including diverse benthic and/or allochthonous (possibly planktonic) microorganisms. Here, we characterize eight morphospecies in focused ion beam (FIB) ultrathin sections using transmission electron microscopy (TEM) and X-ray absorption near-edge structure (XANES) spectromicroscopy. Raman and XANES spectroscopies show the highly aromatic molecular structure of preserved organic matter. Despite this apparently poor molecular preservation, nano-quartz crystallization allowed for the preservation of various ultrastructures distinguished in TEM. In some filamentous microfossils (Siphonophycus) as well as in all cyanobacterial coccoids, extracellular polysaccharide sheaths appear as bands of dispersed organic nanoparticles. Synodophycus microfossils, made up of pluricellular colonies of coccoids, contain organic walls similar to the F-layers of pleurocapsalean cyanobacteria. In some fossils, internal content occurs as particulate organic matter, forming dense networks throughout ghosts of the intracellular space (e.g., in Salome svalbardensis filaments), or scarce granules (in some Chroococcales). In some chroococcalean microfossils (Gloeodiniopsis mikros, and also possibly Polybessurus), we find layered internal contents that are more continuous than nanoparticulate bands defining the sheaths, and with a shape that can be contracted, folded, or invaginated. We interpret these internal layers as the remains of cell envelope substructures and/or photosynthetic membranes thickened by additional cellular material. Some Myxococccoides show a thick (up to ~ 0.9 μm) wall ultrastructure displaying organic pillars that is best reconciled with a eukaryotic affinity. Finally, a large spheroid with ruptured wall, of uncertain affinity, displays a bi-layered envelope. Altogether, our nanoscale investigations provide unprecedented insights into the taphonomy and taxonomy of this well-preserved assemblage, which can help to assess the nature of organic microstructures in older rocks.
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Nov 2024
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[29042, 24534]
Open Access
Abstract: Neuromelanin-pigmented neurons of the substantia nigra are selectively lost during the progression of Parkinson’s disease. These neurons accumulate iron in the disease state, and iron-mediated neuron damage is implicated in cell death. Animal models of Parkinson’s have evidenced iron loading inside the nucleoli of nigral neurons, however the nature of intranuclear iron deposition in the melanised neurons of the human substantia nigra is not understood. Here, scanning transmission x-ray microscopy (STXM) is used to probe iron foci in relation to the surrounding ultrastructure in melanised neurons of human substantia nigra from a confirmed Parkinson’s case. In addition to the expected neuromelanin-bound iron, iron deposits are also associated with the edge of the cell nucleolus. Speciation analysis confirms these deposits to be ferric (Fe3+) iron. The function of intranuclear iron in these cells remains unresolved, although both damaging and protective mechanisms are considered. This finding shows that STXM is a powerful label-free tool for the in situ, nanoscale chemical characterisation of both organic and inorganic intracellular components. Future applications are likely to shed new light on incompletely understood biochemical mechanisms, such as metal dysregulation and morphological changes to cell nucleoli, that are important in understanding the pathogenesis of Parkinson’s.
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Aug 2024
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I08-Scanning X-ray Microscopy beamline (SXM)
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James
Everett
,
Jake
Brooks
,
Vindy Tjendana
Tjhin
,
Frederik
Lermyte
,
Ian
Hands-Portman
,
Germán
Plascencia-Villa
,
George
Perry
,
Peter J.
Sadler
,
Peter B.
O’connor
,
Joanna F.
Collingwood
,
Neil D.
Telling
Open Access
Abstract: The accumulation of amyloid plaques and increased brain redox burdens are neuropathological hallmarks of Alzheimer’s disease. Altered metabolism of essential biometals is another feature of Alzheimer’s, with amyloid plaques representing sites of disturbed metal homeostasis. Despite these observations, metal-targeting disease treatments have not been therapeutically effective to date. A better understanding of amyloid plaque composition and the role of the metals associated with them is critical. To establish this knowledge, the ability to resolve chemical variations at nanometer length scales relevant to biology is essential. Here, we present a methodology for the label-free, nanoscale chemical characterization of amyloid plaques within human Alzheimer’s disease tissue using synchrotron X-ray spectromicroscopy. Our approach exploits a C–H carbon absorption feature, consistent with the presence of lipids, to visualize amyloid plaques selectively against the tissue background, allowing chemical analysis to be performed without the addition of amyloid dyes that alter the native sample chemistry. Using this approach, we show that amyloid plaques contain elevated levels of calcium, carbonates, and iron compared to the surrounding brain tissue. Chemical analysis of iron within plaques revealed the presence of chemically reduced, low-oxidation-state phases, including ferromagnetic metallic iron. The zero-oxidation state of ferromagnetic iron determines its high chemical reactivity and so may contribute to the redox burden in the Alzheimer’s brain and thus drive neurodegeneration. Ferromagnetic metallic iron has no established physiological function in the brain and may represent a target for therapies designed to lower redox burdens in Alzheimer’s disease. Additionally, ferromagnetic metallic iron has magnetic properties that are distinct from the iron oxide forms predominant in tissue, which might be exploitable for the in vivo detection of amyloid pathologies using magnetically sensitive imaging. We anticipate that this label-free X-ray imaging approach will provide further insights into the chemical composition of amyloid plaques, facilitating better understanding of how plaques influence the course of Alzheimer’s disease.
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Mar 2024
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I08-Scanning X-ray Microscopy beamline (SXM)
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Edward
Harding
,
Tohru
Araki
,
Joseph
Askey
,
Matthew
Hunt
,
Arjen
Van Den Berg
,
David
Raftrey
,
Lucia
Aballe
,
Burkhard
Kaulich
,
Emyr
Macdonald
,
Peter
Fischer
,
Sam
Ladak
Open Access
Abstract: Artificial spin-ice systems are patterned arrays of magnetic nanoislands arranged into frustrated geometries and provide insight into the physics of ordering and emergence. The majority of these systems have been realized in two-dimensions, mainly due to the ease of fabrication, but with recent developments in advanced nanolithography, three-dimensional artificial spin ice (ASI) structures have become possible, providing a new paradigm in their study. Such artificially engineered 3D systems provide new opportunities in realizing tunable ground states, new domain wall topologies, monopole propagation, and advanced device concepts, such as magnetic racetrack memory. Direct imaging of 3DASI structures with magnetic force microscopy has thus far been key to probing the physics of these systems but is limited in both the depth of measurement and resolution, ultimately restricting measurement to the uppermost layers of the system. In this work, a method is developed to fabricate 3DASI lattices over an aperture using two-photon lithography, thermal evaporation, and oxygen plasma exposure, allowing the probe of element-specific structural and magnetic information using soft x-ray microscopy with x-ray magnetic circular dichroism (XMCD) as magnetic contrast. The suspended polymer–permalloy lattices are found to be stable under repeated soft x-ray exposure. Analysis of the x-ray absorption signal allows the complex cross section of the magnetic nanowires to be reconstructed and demonstrates a crescent-shaped geometry. Measurement of the XMCD images after the application of an in-plane field suggests a decrease in magnetic moment on the lattice surface due to oxidation, while a measurable signal is retained on sub-lattices below the surface.
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Feb 2024
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[30183, 31026]
Open Access
Abstract: Organic matter in extraterrestrial samples is a complex material that might have played an important role in the delivery of prebiotic molecules to the early Earth. We report here on the identification of nitrogen-containing compounds such as amino acids and N-heterocycles within the recent observed meteorite fall Winchcombe by high-spatial resolution spectroscopy techniques. Although nitrogen contents of Winchcombe organic matter are low (N/C ~ 1–3%), we were able to detect the presence of these compounds using a low-noise direct electron detector. These biologically relevant molecules have therefore been tentatively found within a fresh, minimally processed meteorite sample by high spatial resolution techniques conserving the overall petrographic context. Carbon functional chemistry investigations show that sizes of aromatic domains are small and that abundances of carboxylic functional groups are low. Our observations demonstrate that Winchcombe represents an important addition to the collection of carbonaceous chondrites and still preserves pristine extraterrestrial organic matter.
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Jan 2024
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I08-Scanning X-ray Microscopy beamline (SXM)
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Karin
Eusterhues
,
Juergen
Thieme
,
Sneha
Narvekar
,
Tohru
Araki
,
Majid
Kazemian
,
Burkhard
Kaulich
,
Tom
Regier
,
Jian
Wang
,
Johann
Lugmeier
,
Carmen
Höschen
,
Tim
Mansfeldt
,
Kai Uwe
Totsche
Diamond Proposal Number(s):
[18569]
Abstract: Sorption of organic molecules on mineral surfaces can occur through several binding mechanisms of varying strength. Here, we investigated the importance of inner-sphere P-O-Fe bonds in synthetic and natural mineral-organic associations. Natural organic matter such as water extracted soil organic matter (WESOM) and extracellular polymeric substances (EPS) from liquid bacterial cultures were adsorbed to goethite and examined by FTIR spectroscopy and P K-edge NEXAFS spectroscopy. Natural particles from a Bg soil horizon (Gleysol) were subjected to X-ray fluorescence (XRF) mapping, NanoSIMS imaging, and NEXAFS spectro-microscopy at the P K-edge. Inner-sphere P-O-Fe bonds were identified for both, adsorbed EPS extracts and adsorbed WESOMs. Characteristic infrared peaks for P-O-Fe stretching vibrations are present but cannot unambiguously be interpreted due to possible interferences with mono- and polysaccharides. For the Bg horizon, P was only found on Fe oxides, covering the entire surface at different concentrations, but not on clay minerals. Linear combination fitting of NEXAFS spectra indicates that this adsorbed P is mainly a mixture of orthophosphate and organic P compounds. By combining atomic force microscopy (AFM) images with STXM-generated C and Fe distribution maps, we show that the Fe oxide surfaces were fully coated with organic matter. In contrast, clay minerals revealed a much lower C signal. The C NEXAFS spectra taken on the Fe oxides had a substantial contribution of carboxylic C, aliphatic C, and O-alkyl C, which is a composition clearly different from pure adsorbed EPS or aromatic-rich lignin-derived compounds. Our data show that inner-sphere P-O-Fe bonds are important for the association of Fe oxides with soil organic matter. In the Bg horizon, carboxyl groups and orthophosphate compete with the organic P compounds for adsorption sites.
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Sep 2023
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