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27 items found (0 items not approved), displaying 1 to 10.[First/Prev] 1, 2, 3 [Next/Last]

Instruments / Technical Area	Publication Details	Published
	Wavefront sensing at a high-repetition-rate X-ray free-electron laser Trey Guest , Patrik Vagovic , Luigi Adriano , Johan Bielecki , Sarlota Birnsteinova , Rita Graceffa , Jayanath Koliyadu , Kaye Morgan , Hiiro Moriyama , Daniel Mosko , Grant Van Riessen , Kristian Sabol , Tokushi Sato , Peter Szeles , Zane Taylor , Jozef Ulicny , Richard Bean , Adrian P. Mancuso , Brian Abbey Journal Of Synchrotron Radiation 33 DOI: 10.1107/S1600577526005898 Open Access Show Abstract ▼ Abstract: Wavefront characterization is essential for diagnosing, interpreting and mitigating performance limitations at X-ray free-electron lasers (XFELs). However, the dramatic increase in thermal load and data throughput at high repetition rates makes established wavefront characterization methods difficult to implement effectively. Here, we demonstrate that X-ray speckle arising from beamline optics can enable fast, robust and sensor-free wavefront metrology at next-generation XFEL facilities. Combining this approach with a statistical formulation of X-ray speckle tracking, we quantify local wavefront fluctuations within pulse trains at the European XFEL. We find that shot-to-shot wavefront fluctuations are predominantly planar phase tilts with distinct statistical signatures across intra- and inter-train timescales. The dominant source of wavefront error is periodic at frequencies consistent with known mechanical oscillation modes of the photon transport optics, while intra-train fluctuations correlate with instabilities in the electron bunch trajectory. Our results establish a practical framework for high-repetition-rate wavefront characterization and diagnostics at next-generation XFELs.	Sep 2026
	High-throughput in situ single particle X-ray imaging of dehydrating viral capsids Abhishek Mall , Anna Munke , Parichita Mazumder , Zhou Shen , Johan Bielecki , Juncheng E , Armando D. Estillore , Chan Kim , Romain Letrun , Jannik Lübke , Safi Rafie-Zinedine , Adam Round , Ekaterina Round , Michael Rütten , Amit K. Samanta , Abhisakh Sarma , Tokushi Sato , Florian Schulz , Carolin Seuring , Tamme Wollweber , Lena Worbs , Patrik Vagovic , Richard Bean , Adrian P. Mancuso , Ne-Te Duane Loh , Tobias Beck , Jochen Küpper , Filipe R. N. C. Maia , Henry N. Chapman , Kartik Ayyer Light: Science & Applications 15 DOI: 10.1038/s41377-026-02262-0 Open Access Show Abstract ▼ Abstract: Single-stranded RNA viruses co-assemble their capsid with the genome, and variations in capsid structures can have significant functional relevance. In particular, viruses need to respond to a dehydrating environment to prevent genomic degradation and remain active upon rehydration. Theoretical work has predicted low-energy buckling transitions in icosahedral capsids, which could protect the virus from further dehydration. However, there has been no direct experimental evidence, nor a molecular mechanism, for such behavior. Here, we observe this transition using X-ray single particle imaging of MS2 bacteriophages after aerosolization. Using a combination of machine learning tools, we classify hundreds of thousands of single-particle diffraction patterns to learn the structural landscape of the capsid morphology as a function of time spent in the aerosol phase. We found a previously unreported compact conformation as well as intermediate structures that suggest an incoherent buckling transition that does not preserve icosahedral symmetry. Finally, we propose a mechanism for this buckling, where a single 19-residue loop is destabilized, leading to the large observed morphological change. Our results provide experimental evidence for a mechanism by which viral capsids may protect themselves from dehydration upon aerosolization. In the process, these findings also demonstrate the power of single-particle X-ray imaging and machine learning methods in studying biomolecular structural dynamics.	Jun 2026
I19-Small Molecule Single Crystal Diffraction	Substituent-directed assembly of 1D and 2D silver aryl tellurolates with tunable emission Komal Rani , Anietie W. Williams , Tarun Kaushik , Daniel W. Paley , Maggie C Willson , Masha Aleksich , Patience A. Kotei , Mark R. Warren , Adrian P. Mancuso , Kerry Gilmore , Aaron S. Brewster , J. Nathan Hohman Materials Advances DOI: 10.1039/D5MA01354B Diamond Proposal Number(s): [35300] Open Access Show Abstract ▼ Abstract: Metal-organic chalcogenolates (MOChas) are hybrid materials notable for excellent air and water stability and strong light-matter interactions. Tellurium-based MOChas have been limited to only a single example, tethrene (AgTePh). We modified a Grignard-based synthetic approach to prepare bis(4-methoxyphenyl) ditelluride and bis(3-methoxyphenyl) ditelluride, then prepared the corresponding MOChas. We used synchrotron serial crystallography at the Diamond Light Source, merging 90-degree sweeps from six selected microcrystals using "needle-in-a-haystack" approach to solve the crystal structure of AgTe-4M, revealing the tethrene-like 2-dimensional layered system. We also identified a bright red luminescent AgTe-3M derivative that is consistent with a 1-dimensional system. In parallel, we observed that elemental tellurium is a problematic contaminant that negatively impacts crystal morphology and yield when present during the synthesis. We demonstrate that inclusion of elemental tellurium is generally tolerated when <1% by weight.	Apr 2026
	Stabilizing structural transitional states between 1- and 2-dimensional topologies via hydrogen bond-mediated crystal engineering Mariya Aleksich , Adriana J. Ladera , Avery Lamonica , Kara Christensen , Daniel W. Paley , David W. Mittan-Moreau , Vanessa Oklejas , Matthias Zeller , Maggie C. Willson , Patience A. Kotei , Komal Rani , Elyse A. Schriber , Aria Mansouri Tehrani , Mohammad Vakili , Christopher J. Milne , Joana Valerio , Marco Kloos , Doriana Vinci , Adam Round , Dmitry Khakhulin , Fernando Ardana-Lamas , Frederico Lima , Yohei Uemura , Adrian P. Mancuso , Hazem Yousef , Shigeki Owada , Ichiro Inoue , Kensuke Tono , Nicholas K. Sauter , Aaron S. Brewster , Tess Smidt , James N. Hohman Journal Of The American Chemical Society DOI: 10.1021/jacs.5c09213 Show Abstract ▼ Abstract: Metal–organic chalcogenolates (MOChas) are hybrid materials composed of metal-chalcogenide networks coordinated by organic ligands, offering a versatile platform for structural and electronic tunability. The use of molecular ligand design to steer material formation represents a powerful strategy for accessing new solid-state topologies. In this work, we report two new silver benzenethiolate MOChas incorporating protic meta-functionalized ligands─hydroxy (−OH) and amine (−NH2)─which exhibit hydrogen-bond-driven supramolecular organization and novel inorganic connectivities. Rather than modifying existing materials, we contextualize these compounds as distinct outcomes within a structural continuum. Silver para- and meta-methoxy-benzenethiolates (p-OCH3 and m-OCH3) serve as control points for known 2D and 1D topologies, respectively. The new materials, m-OH and m-NH2, were structurally characterized using small molecule serial femtosecond crystallography (smSFX), and their intermediate energetic and electronic properties were confirmed through density functional theory (DFT) calculations. We introduce the concept of supramolecular distortion to describe how ligand-driven intermolecular interactions reshape inorganic topology─not as deviations from a fixed state, but as distinct, kinetically accessible ground-state architectures. This work establishes a design paradigm linking organic ligand identity to predictable shifts in inorganic dimensionality in MOChas.	Mar 2026
	The single-particle, clusters and biomolecules and serial femtosecond crystallography instrument of the European X-ray Free-Electron Laser: Interaction region downstream at atmospheric pressure (IRD) Adam Round , Pierre Aller , Richard Bean , Johan Bielecki , Agata Butryn , Nicholas E. Devenish , Raphael De Wijn , Thomas Dietze , Katerina Doerner , Fabio Dall'Antonia , Gabriele Giovanetti , Huijong Han , Vincent Hennicke , Chan Kim , Yoonhee Kim , Marco Kloos , Jayanath C. P. Koliyadu , Gabriel Leen , Romain Letrun , Luis Lopez Morillo , Allen M. Orville , Tim Pakendorf , Marco Ramilli , Nadja Reimers , Patrick Reinke , Juan Sanchez-Weatherby , Tokushi Sato , Robin Schubert , Joachim Schulz , Cedric Signe Takem , Marcin Sikorski , Prasad Thute , Fabian Trost , Oleksii Turkot , Patrik Vagovic , Mohammad Vakili , Raul Villanueva Guerrero , Henry N. Chapman , Alke Meents , Serguei Molodtsov , Sakura Pascarelli , Thomas Tschentschera , Adrian Mancuso , Pontus Fischer , Sebastian Guenther Journal Of Synchrotron Radiation 33 DOI: 10.1107/S1600577525008999 Open Access Show Abstract ▼ Abstract: The Single-Particle, Clusters and Biomolecules and Serial Femtosecond Crystallography (SPB/SFX) scientific instrument at the European X-Ray Free-Electron Laser (EuXFEL) became operational with user experiments in September 2017. The unique properties and capabilities of the EuXFEL, enabling megahertz data collection rates, provide more rapid data collection with improved statistics compared with other XFEL facilities. This improves the feasibility of obtaining multiple data points in time-resolved experiments and hence enables the observation of reactions in greater detail (molecular movies). In collaboration with the SFX User Consortium (SFX UC), the SPB/SFX instrument was designed to further increase user access and research outcomes. Focusing the pulses downstream of the first interaction region [described previously (Mancuso et al., 2019)], a second experiment plane is enabled, which allows for greater optimization and more efficient usage of available beam time. Additionally, the SFX UC provided further instrumentation to provide improved capabilities on SPB/SFX. The aim for additional and extended functionality for the second interaction region was to enable sample-efficient data collection at atmospheric pressure in an environment where the sample temperature and humidity can be controlled. This paper describes the extended capabilities of the downstream interaction region of the SPB/SFX instrument and its major components, in particular its X-ray focusing optics, vacuum to atmospheric pressure out-coupling, available sample delivery methods and 2D detector, and the supporting optical laser systems for pump–probe experiments.	Nov 2025
	Ultrasonic cavitation shock wave exfoliation dynamics of 2D materials revealed in situ by MHz XFEL imaging and multiphysics modeling Kang Xiang , Ling Qin , Shi Huang , Hongyuan Song , Vasilii Bazhenov , Sarlota Birnšteinová , Raphael De Wijn , Jayanath C. P. Koliyadu , Faisal H. M. Koua , Adam Round , Ekaterina Round , Abhisakh Sarma , Tokushi Sato , Marcin Sikorski , Yuhe Zhang , Eleni Myrto Asimakopoulou , Pablo Villanueva-Perez , Kyriakos Porfyrakis , Iakovos Tzanakis , Dmitry G. Eskin , Nicole Grobert , Adrian Mancuso , Richard Bean , Patrik Vagovic , Jiawei Mi , Valerio Bellucci Science Advances 11 DOI: 10.1126/sciadv.ady9558 Open Access Show Abstract ▼ Abstract: Using megahertz x-ray free electron laser imaging with x-ray pulses of ~25 femtoseconds and a machine-learning strategy, we have conducted comprehensive in situ imaging studies on the dynamics of cavitation bubble clouds in ultrasound fields at the SPB/SFX beamline of the European XFEL. The research unambiguously revealed the quasi-simultaneous implosion of multiple bubbles and simultaneous collapse of bubble cloud in nanosecond scale and their dynamic impacts onto two-dimensional (2D) materials for layer exfoliation. We have also performed multiphysics modeling to simulate the shock wave emission, propagation, impact, and stresses produced. We elucidated the critical conditions for producing instant or fatigue exfoliation and the effects of bonding strengths and structural defects on the exfoliation rate. The discoveries have filled the long-standing missing knowledge gaps in the underlying physics of exfoliating 2D materials in ultrasound fields, providing a solid theoretical foundation for optimizing and scaling-up operation to produce 2D materials in a much more cost-effective and sustainable way.	Nov 2025
	Pr and Pfr structures of plant phytochrome A Soshichiro Nagano , David Von Stetten , Kaoling Guan , Peng-Yuan Chen , Chen Song , Thomas Barends , Manfred S. Weiss , Christian G. Feiler , Katerina Dörner , Iñaki De Diego Martinez , Robin Schubert , Johan Bielecki , Lea Brings , Huijong Han , Konstantin Kharitonov , Chan Kim , Marco Kloos , Jayanath C. P. Koliyadu , Faisal H. M. Koua , Ekaterina Round , Abhisakh Sarma , Tokushi Sato , Christina Schmidt , Joana Valerio , Agnieszka Wrona , Joachim Schulz , Raphael De Wijn , Romain Letrun , Richard Bean , Adrian Mancuso , Karsten Heyne , Jon Hughes Nature Communications 16 DOI: 10.1038/s41467-025-60738-w Open Access Show Abstract ▼ Abstract: Phytochromes are biliprotein photoreceptors widespread amongst microorganisms and ubiquitous in plants where they control developmental processes as diverse as germination, stem elongation and floral induction through the photoconversion of inactive Pr to the Pfr signalling state. Here we report crystal structures of the chromophore-binding module of soybean phytochrome A, including ~2.2 Å XFEL structures of Pr and Pfr at ambient temperature and high resolution cryogenic structures of Pr. In the Pfr structure, the chromophore is exposed to the medium, the D-ring remaining α-facial following the likely clockwise photoflip. The chromophore shifts within its pocket, while its propionate side chains, their partners as well as three neighbouring tyrosines shift radically. Helices near the chromophore show substantial shifts that might represent components of the light signal. These changes reflect those in bacteriophytochromes despite their quite different signalling mechanisms, implying that fundamental aspects of phytochrome photoactivation have been repurposed for photoregulation in the eukaryotic plant.	Jun 2025
	Real-time analysis of liquid jet sample delivery stability for an X-ray free-electron laser using machine vision Jaydeep Patel , Adam Round , Raphael De Wijn , Mohammad Vakili , Gabriele Giovanetti , Diogo Filipe Monrroy Vilan E Melo , Juncheng E , Marcin Sikorski , Jayanth Koliyadu , Faisal H. M. Koua , Tokushi Sato , Adrian Mancuso , Andrew Peele , Brian Abbey Journal Of Applied Crystallography 57 DOI: 10.1107/S1600576724009853 Open Access Show Abstract ▼ Abstract: Automated evaluation of optical microscopy images of liquid jets, commonly used for sample delivery at X-ray free-electron lasers (XFELs), enables real-time tracking of the jet position and liquid jet hit rates, defined here as the proportion of XFEL pulses intersecting with the liquid jet. This method utilizes machine vision for preprocessing, feature extraction, segmentation and jet detection as well as tracking to extract key physical characteristics (such as the jet angle) from optical microscopy images captured during experiments. To determine the effectiveness of these tools in monitoring jet stability and enhancing sample delivery efficiency, we conducted XFEL experiments with various sample compositions (pure water, buffer and buffer with crystals), nozzle designs and jetting conditions. We integrated our real-time analysis algorithm into the Karabo control system at the European XFEL. The results indicate that the algorithm performs well in monitoring the jet angle and provides a quantitative characterization of liquid jet stability through optical image analysis conducted during experiments.	Dec 2024
I19-Small Molecule Single Crystal Diffraction	Ligand-mediated quantum yield enhancement in 1-D silver organothiolate metal–organic chalcogenolates Mariya Aleksich , Yeongsu Cho , Daniel W. Paley , Maggie C. Willson , Hawi N. Nyiera , Patience A. Kotei , Vanessa Oklejas , David W. Mittan-Moreau , Elyse A. Schriber , Kara Christensen , Ichiro Inoue , Shigeki Owada , Kensuke Tono , Michihiro Sugahara , Satomi Inaba-Inoue , Mohammad Vakili , Christopher J. Milne , Fabio Dallantonia , Dmitry Khakhulin , Fernando Ardana-Lamas , Frederico Lima , Joana Valerio , Huijong Han , Tamires Gallo , Hazem Yousef , Oleksii Turkot , Ivette J. Bermudez Macias , Thomas Kluyver , Philipp Schmidt , Luca Gelisio , Adam R. Round , Yifeng Jiang , Doriana Vinci , Yohei Uemura , Marco Kloos , Adrian P. Mancuso , Mark Warren , Nicholas K. Sauter , Jing Zhao , Tess Smidt , Heather J. Kulik , Sahar Sharifzadeh , Aaron S. Brewster , J. Nathan Hohman Advanced Functional Materials 17 DOI: 10.1002/adfm.202414914 Diamond Proposal Number(s): [35300] Show Abstract ▼ Abstract: X-ray free electron laser (XFEL) microcrystallography and synchrotron single-crystal crystallography are used to evaluate the role of organic substituent position on the optoelectronic properties of metal–organic chalcogenolates (MOChas). MOChas are crystalline 1D and 2D semiconducting hybrid materials that have varying optoelectronic properties depending on composition, topology, and structure. While MOChas have attracted much interest, small crystal sizes impede routine crystal structure determination. A series of constitutional isomers where the aryl thiol is functionalized by either methoxy or methyl ester are solved by small molecule serial femtosecond X-ray crystallography (smSFX) and single crystal rotational crystallography. While all the methoxy examples have a low quantum yield (0-1%), the methyl ester in the ortho position yields a high quantum yield of 22%. The proximity of the oxygen atoms to the silver inorganic core correlates to a considerable enhancement of quantum yield. Four crystal structures are solved at a resolution range of 0.8–1.0 Å revealing a collapse of the 2D topology for functional groups in the 2- and 3- positions, resulting in needle-like crystals. Further analysis using density functional theory (DFT) and many-body perturbation theory (MBPT) enables the exploration of complex excitonic phenomena within easily prepared material systems.	Dec 2024
	Development of MHz X-ray phase contrast imaging at the European XFEL Jayanath C. P. Koliyadu , Daniel Moško , Eleni Myrto Asimakopoulou , Valerio Bellucci , Šarlota Birnšteinová , Richard Bean , Romain Letrun , Chan Kim , Henry Kirkwood , Gabriele Giovanetti , Nerea Jardon , Janusz Szuba , Trey Guest , Andreas Koch , Jan Grünert , Peter Szeles , Pablo Villanueva-Perez , Fabian Reuter , Claus-Dieter Ohl , Mike Andreas Noack , Francisco Garcia-Moreno , Zuzana Kuglerová-Valdová , Libor Juha , Martin Nikl , Wataru Yashiro , Hitoshi Soyama , Daniel Eakins , Alexander M. Korsunsky , Jozef Ulicny , Alke Meents , Henry N. Chapman , Adrian P. Mancuso , Tokushi Sato , Patrik Vagovic Journal Of Synchrotron Radiation 32 DOI: 10.1107/S160057752400986X Open Access Show Abstract ▼ Abstract: We report on recent developments that enable megahertz hard X-ray phase contrast imaging (MHz XPCI) experiments at the Single Particles, Clusters, and Biomolecules and Serial Femtosecond Crystallography (SPB/SFX) instrument of the European XFEL facility (EuXFEL). We describe the technical implementation of the key components, including an MHz fast camera and a modular indirect X-ray microscope system based on fast scintillators coupled through a high-resolution optical microscope, which enable full-field X-ray microscopy with phase contrast of fast and irreversible phenomena. The image quality for MHz XPCI data showed significant improvement compared with a pilot demonstration of the technique using parallel beam illumination, which also allows access to up to 24 keV photon energies at the SPB/SFX instrument of the EuXFEL. With these developments, MHz XPCI was implemented as a new method offered for a broad user community (academic and industrial) and is accessible via standard user proposals. Furthermore, intra-train pulse diagnostics with a high few-micrometre spatial resolution and recording up to 128 images of consecutive pulses in a train at up to 1.1 MHz repetition rate is available upstream of the instrument. Together with the diagnostic camera upstream of the instrument and the MHz XPCI setup at the SPB/SFX instrument, simultaneous two-plane measurements for future beam studies and feedback for machine parameter tuning are now possible.	Nov 2024

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