I13-2-Diamond Manchester Imaging
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Maximilian
Ackermann
,
Paul
Tafforeau
,
Willi
Wagner
,
Claire
Walsh
,
Christopher
Werlein
,
Mark P.
Kuhnel
,
Florian P.
Länger
,
Catherine
Disney
,
Andrew
Bodey
,
Alexandre
Bellier
,
Stijn E.
Verleden
,
Peter D.
Lee
,
Steven J
Mentzer
,
Danny D.
Jonigk
Diamond Proposal Number(s):
[27025, 27094]
Open Access
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Nov 2021
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I13-1-Coherence
I13-2-Diamond Manchester Imaging
Data acquisition
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Christoph
Rau
,
Shashidhara
Marathe
,
Andrew J.
Bodey
,
Malte
Storm
,
Darren
Batey
,
Silvia
Cipiccia
,
Peng
Li
,
Ralf F.
Ziesche
,
Mohamed
Al-Hada
,
Sven L. M.
Schroeder
,
Gunjan
Das
,
Anjali
Goswami
Open Access
Abstract: We report about multiscale tomography with high throughput at the Diamond beamline I13L. The beamline has the purpose of multi-scale and operando imaging and consists of two independent branchlines operating in real and reciprocal space. The imaging branch -called Diamond-Manchester branchline- hosts micro-tomography, grating interferometry and a full-field microscope. For rapid recording a broad spectrum of the undulator radiation is used either with band-passing the light with a combination of a filter and a deflecting mirror or using a multilayer monochromator. For all the methods similar recording times can be achieved, with typical scanning times of some minutes and covering the resolution range from microns to the 100nm range. Most recently a robot arm has been installed to increase the throughput to 300 samples per day. The system is now implemented for user operation in remote operation mode for the micro-tomography setup and can be expanded to the two other experiments. The instrumental capabilities are applied on various topics such as the study of biodiversity of insects or the structural variations of electrode materials in batteries. Fast recording with dedicated sample environments (not using the sample changing robot) enables operando studies in many areas, the charging/discharging cycles on batteries, the degradation of teeth enamel under various conditions or loading brine sandstone mixtures with CO2, to name some examples. For imaging with highest spatial resolution we managed to improve significantly the recording speed of ptycho-tomography, which is now in the order of hours and will be reduced further. We demonstrated in the past 2-D recording with 10kHz and expand the instrumental capability with specific hardware dependent triggering and scanning schemes. We expand the research program for multi-scale imaging across both branchlines (imaging and coherence branchlines) with first studies such as batteries, brain research, concrete.
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Oct 2021
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[19322]
Open Access
Abstract: Many soft tissues, such as the intervertebral disc (IVD), have a hierarchical fibrous composite structure which suffers from regional damage. We hypothesise that these tissue regions have distinct, inherent fibre structure and structural response upon loading. Here we used synchrotron computed tomography (sCT) to resolve collagen fibre bundles (∼5μm width) in 3D throughout an intact native rat lumbar IVD under increasing compressive load. Using intact samples meant that tissue boundaries (such as endplate-disc or nucleus-annulus) and residual strain were preserved; this is vital for characterising both the inherent structure and structural changes upon loading in tissue regions functioning in a near-native environment. Nano-scale displacement measurements along >10,000 individual fibres were tracked, and fibre orientation, curvature and strain changes were compared between the posterior-lateral region and the anterior region. These methods can be widely applied to other soft tissues, to identify fibre structures which cause tissue regions to be more susceptible to injury and degeneration. Our results demonstrate for the first time that highly-localised changes in fibre orientation, curvature and strain indicate differences in regional strain transfer and mechanical function (e.g. tissue compliance). This included decreased fibre reorientation at higher loads, specific tissue morphology which reduced capacity for flexibility and high strain at the disc-endplate boundary.
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Oct 2021
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I13-2-Diamond Manchester Imaging
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Aïcha
Ben Zemzem
,
Aline
Genevaux
,
Amandine
Wahart
,
Andrew J.
Bodey
,
Sébastien
Blaise
,
Béatrice
Romier-Crouzet
,
Jessica
Jonquet
,
Camille
Bour
,
Rémi
Cogranne
,
Pierre
Beauseroy
,
Manuel
Dauchez
,
Michael J.
Sherratt
,
Laurent
Debelle
,
Sébastien
Almagro
Diamond Proposal Number(s):
[12776]
Open Access
Abstract: The arterial wall consists of three concentric layers: intima, media, and adventitia. Beyond their resident cells, these layers are characterized by an extracellular matrix (ECM), which provides both biochemical and mechanical support. Elastin, the major component of arterial ECM, is present in the medial layer and organized in concentric elastic lamellae that confer resilience to the wall. We explored the arterial wall structures from C57Bl6 (control), db/db (diabetic), and ApoE−/− (atherogenic) mice aged 3 months using synchrotron X-ray computed microtomography on fixed and unstained tissues with a large image field (8 mm3). This approach combined a good resolution (0.83 µm/voxel), large 3D imaging field. and an excellent signal to noise ratio conferred by phase-contrast imaging. We determined from 2D virtual slices that the thickness of intramural ECM structures was comparable between strains but automated image analysis of the 3D arterial volumes revealed a lattice-like network within concentric elastic lamellae. We hypothesize that this network could play a role in arterial mechanics. This work demonstrates that phase-contrast synchrotron X-ray computed microtomography is a powerful technique which to characterize unstained soft tissues.
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Oct 2021
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[21081, 24233]
Abstract: Soft porous matter is commonly encountered in artificial tissue applications, pharmaceuticals delivery systems and in cosmetic and food products. These materials are typically opaque and tend to deform under very small levels of shear; this makes the characterization of their microstructure very challenging, particularly in the native state. Air-in-oil systems (oleofoams) are an emerging type of soft material with promising applications in cosmetics and foods, which contain air bubbles stabilized by Pickering fat crystals dispersed in a liquid oil phase. Synchrotron radiation X-ray computed tomography (SR - XCT) is a non-invasive, non-destructive technique increasingly used to investigate multiphasic, porous materials, owing to its high flux which enables sub-micron resolution and significant statistics at rapid acquisition speed. While the penetration of high energy X-rays can provide high resolution images and allows the reconstruction of the 3D structure of samples, the experimental setup and measuring parameters need to be carefully designed to avoid sample deformation or beam damage.
In this work, a robust methodology for investigating the 3D microstructure of soft, porous matter was developed. Sample preparation and experimental setup were chosen to allow synchrotron tomographic analysis of soft oleofoams with a low melting point (<30 °C). In particular, the use of cryogenic conditions (plunge-freeze in liquid nitrogen) provided stability against melting during the acquisition. Additionally, an image processing workflow was designed for analysing the 3D microstructure of the samples using ImageJ. Hence, the size and shape distribution of the air phase, as well as the thickness of the continuous gel phase could be determined for samples with significantly different microstructures (fresh vs. heated). Furthermore, the use of time-resolved X-ray radiography (XRR) allowed to study dynamic changes in the microstructure of the samples during thermal destabilization, visualizing bubble coalescence and growth in optically opaque foam samples with a sub-second timescale.
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Aug 2021
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[12538, 14907, 23866]
Open Access
Abstract: Thousands of soft tissue microtomography experiments are conducted at synchrotrons around the world each year, and the quality of results varies widely. Soft biological tissues pose a particular challenge for synchrotron tomography, owing to poor contrast and susceptibility to deformation and beam damage artefacts. The rationale behind the choice of sample preparation methods, imaging parameters and reconstruction strategy is not always reported in articles, and so we conducted a systematic investigation of these aspects of experimental design for central nervous system samples. Computational segmentation can be particularly challenging for soft-tissue tomograms, and so we demonstrate the use of supervoxel-based machine-learning segmentation of our data.
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Jul 2021
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[22575, 20132]
Abstract: Digital volume correlation (DVC) in combination with high-resolution micro-computed tomography (microCT) imaging and in situ mechanical testing is gaining popularity for quantifying 3D full-field strains in bone and biomaterials. However, traditional in situ time-lapsed (i.e., interrupted) mechanical testing cannot fully capture the dynamic strain mechanisms in viscoelastic biological materials. The aim of this study was to investigate the time-resolved deformation of bone structures and analogues via continuous in situ synchrotron-radiation microCT (SR-microCT) compression and DVC to gain a better insight into their structure-function relationships. Fast SR-microCT imaging enabled the deformation behaviour to be captured with high temporal and spatial resolution. Time-resolved DVC highlighted the relationship between local strains and damage initiation and progression in the different biostructures undergoing plastic deformation, bending and/or buckling of their main microstructural elements. The results showed that SR-microCT continuous mechanical testing complemented and enhanced the information obtained from time-lapsed testing, which may underestimate the 3D strain magnitudes as a result of the stress relaxation occurring in between steps before image acquisition in porous biomaterials. Altogether, the findings of this study highlight the importance of time-resolved in situ experiments to fully characterise the time-dependent mechanical behaviour of biological tissues and biomaterials and to further explore their micromechanics under physiologically relevant conditions.
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Jun 2021
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[23866]
Open Access
Abstract: In this study, the nanoscale transformation of the polylactic-co-glycolic acid (PLGA) internal structure, before and after its supercritical carbon dioxide (sc-CO2) swelling and plasticization, followed by foaming after a CO2 pressure drop, was studied by small-angle X-ray scattering (SAXS) for the first time. A comparative analysis of the internal structure data and porosity measurements for PLGA scaffolds, produced by sc-CO2 processing, on a scale ranging from 0.02 to 1000 μm, was performed by SAXS, helium pycnometry (HP), mercury intrusion porosimetry (MIP) and both “lab-source” and synchrotron X-ray microtomography (micro-CT). This approach opens up possibilities for the wide-scale evaluation, computer modeling, and prediction of the physical and mechanical properties of PLGA scaffolds, as well as their biodegradation behavior in the body. Hence, this study targets optimizing the process parameters of PLGA scaffold fabrication for specific biomedical applications.
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Mar 2021
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[9860]
Abstract: Osteogenesis imperfecta (OI or brittle bone disease) is a group of genetic disorders of the connective tissues caused mainly by mutations in the genes encoding collagen type I. Clinical manifestations of OI include skeletal fragility, bone deformities, and severe functional disabilities, such as hearing loss. Progressive hearing loss, usually beginning in childhood, affects approximately 70% of people with OI with more than half of the cases involving the inner ear. There is no cure for OI nor a treatment to ameliorate its corresponding hearing loss, and very little is known about the properties of OI ears. In this study, we investigate the morphology of the otic capsule and the cochlea in the inner ear of the oim mouse model of OI. High-resolution 3D images of 8-week old oim and WT inner ears were acquired using synchrotron microtomography. Volumetric morphometric measurements were conducted for the otic capsule, its intracortical canal network and osteocyte lacunae, and for the cochlear spiral ducts. Our results show that the morphology of the cochlea is preserved in the oim ears at 8 weeks of age but the otic capsule has a greater cortical thickness and altered intracortical bone porosity, with a larger number and volume density of highly branched canals in the oim otic capsule. These results portray a state of compromised bone quality in the otic capsule of the oim mice that may contribute to their hearing loss.
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Feb 2021
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[19348]
Open Access
Abstract: The mechanics of breathing is a fascinating and vital process. The lung has complexities and subtle heterogeneities in structure across length scales that influence mechanics and function. This study establishes an experimental pipeline for capturing alveolar deformations during a respiratory cycle using synchrotron radiation micro-computed tomography (SR-micro-CT). Rodent lungs were mechanically ventilated and imaged at various time points during the respiratory cycle. Pressure-Volume (P-V) characteristics were recorded to capture any changes in overall lung mechanical behaviour during the experiment. A sequence of tomograms was collected from the lungs within the intact thoracic cavity. Digital volume correlation (DVC) was used to compute the three-dimensional strain field at the alveolar level from the time sequence of reconstructed tomograms. Regional differences in ventilation were highlighted during the respiratory cycle, relating the local strains within the lung tissue to the global ventilation measurements. Strains locally reached approximately 150% compared to the averaged regional deformations of approximately 80–100%. Redistribution of air within the lungs was observed during cycling. Regions which were relatively poorly ventilated (low deformations compared to its neighbouring region) were deforming more uniformly at later stages of the experiment (consistent with its neighbouring region). Such heterogenous phenomena are common in everyday breathing. In pathological lungs, some of these non-uniformities in deformation behaviour can become exaggerated, leading to poor function or further damage. The technique presented can help characterize the multiscale biomechanical nature of a given pathology to improve patient management strategies, considering both the local and global lung mechanics.
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Jan 2021
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