I19-Small Molecule Single Crystal Diffraction
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Diamond Proposal Number(s):
[18193]
Open Access
Abstract: In this work we use high-resolution synchrotron X-ray diffraction for electron density mapping, in conjunction with ab initio modelling, to study short O—H⋯O and O+—H⋯O− hydrogen bonds whose behaviour is known to be tuneable by temperature. The short hydrogen bonds have donor–acceptor distances in the region of 2.45 Å and are formed in substituted urea and organic acid molecular complexes of N,N′-dimethylurea oxalic acid 2[thin space (1/6-em)]:[thin space (1/6-em)]1 (1), N,N-dimethylurea 2,4-dinitrobenzoate 1[thin space (1/6-em)]:[thin space (1/6-em)]1 (2) and N,N-dimethylurea 3,5-dinitrobenzoic acid 2[thin space (1/6-em)]:[thin space (1/6-em)]2 (3). From the combined analyses, these complexes are found to fall within the salt-cocrystal continuum and exhibit short hydrogen bonds that can be characterised as both strong and electrostatic (1, 3) or very strong with a significant covalent contribution (2). An additional charge assisted component is found to be important in distinguishing the relatively uncommon O—H⋯O pseudo-covalent interaction from a typical strong hydrogen bond. The electron density is found to be sensitive to the extent of static proton transfer, presenting it as a useful parameter in the study of the salt–cocrystal continuum. From complementary calculated hydrogen atom potentials, we attribute changes in proton position to the molecular environment. Calculated potentials also show zero barrier to proton migration, forming an ‘energy slide’ between the donor and acceptor atoms. The better fundamental understanding of the short hydrogen bond in the ‘zone of fluctuation’ presented in a salt-cocrystal continuum, enabled by studies like this, provide greater insight into their related properties and can have implications in the regulation of pharmaceutical materials.
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Aug 2021
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I19-Small Molecule Single Crystal Diffraction
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Sérgio M. F.
Vilela
,
Jorge A. R.
Navarro
,
Paula
Barbosa
,
Ricardo F.
Mendes
,
Germán
Pérez-Sánchez
,
Harriott
Nowell
,
Duarte
Ananias
,
Filipe
Figueiredo
,
José R. B.
Gomes
,
João P. C.
Tomé
,
Filipe A.
Almeida Paz
Abstract: Porous robust materials are typically the primary selection of several industrial processes. Many of these compounds are, however, not robust enough to be used as multifunctional materials. This is typically the case of Metal–Organic Frameworks (MOFs) which rarely combine several different excellent functionalities into the same material. In this report we describe the simple acid–base postsynthetic modification of isotypical porous rare-earth-phosphonate MOFs into a truly multifunctional system, maintaining the original porosity features: [Ln(H3pptd)]·xSolvent [where Ln3+ = Y3+ (1) and (Y0.95Eu0.05)3+ (1_Eu)] are converted into [K3Ln(pptd)]·zSolvent [where Ln3+ = Y3+ (1K) and (Y0.95Eu0.05)3+ (1K_Eu)] by immersing the powder of 1 and 1_Eu into an ethanolic solution of KOH for 48 h. The K+-exchanged Eu3+-based material exhibits a considerable boost in CO2 adsorption, capable of being reused for several consecutive cycles. It can further separate C2H2 from CO2 from a complex ternary gas mixture composed of CH4, CO2, and C2H2. This high adsorption selectivity is, additionally, observed for other gaseous mixtures, such as C3H6 and C3H8, with all these results being supported by detailed theoretical calculations. The incorporation of K+ ions notably increases the electrical conductivity by 4 orders of magnitude in high relative humidity conditions. The conductivity is assumed to be predominantly protonic in nature, rendering this material as one of the best conducting MOFs reported to date.
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Jan 2021
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I11-High Resolution Powder Diffraction
I19-Small Molecule Single Crystal Diffraction
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Stephen P.
Argent
,
Ivan
Da Silva
,
Alex
Greenaway
,
Mathew
Savage
,
Jack
Humby
,
Andrew J.
Davies
,
Harriott
Nowell
,
William
Lewis
,
Pascal
Manuel
,
Chiu C.
Tang
,
Alexander J.
Blake
,
Michael W.
George
,
Alexander V.
Markevich
,
Elena
Besley
,
Sihai
Yang
,
Neil R.
Champness
,
Martin
Schroeder
Diamond Proposal Number(s):
[861, 11622, 15833, 9443]
Open Access
Abstract: Designing porous materials which can selectively adsorb CO2 or CH4 is an important environmental and industrial goal which requires an understanding of the host–guest interactions involved at the atomic scale. Metal–organic polyhedra (MOPs) showing permanent porosity upon desolvation are rarely observed. We report a family of MOPs (Cu-1a, Cu-1b, Cu-2), which derive their permanent porosity from cavities between packed cages rather than from within the polyhedra. Thus, for Cu-1a, the void fraction outside the cages totals 56% with only 2% within. The relative stabilities of these MOP structures are rationalized by considering their weak nondirectional packing interactions using Hirshfeld surface analyses. The exceptional stability of Cu-1a enables a detailed structural investigation into the adsorption of CO2 and CH4 using in situ X-ray and neutron diffraction, coupled with DFT calculations. The primary binding sites for adsorbed CO2 and CH4 in Cu-1a are found to be the open metal sites and pockets defined by the faces of phenyl rings. More importantly, the structural analysis of a hydrated sample of Cu-1a reveals a strong hydrogen bond between the adsorbed CO2 molecule and the Cu(II)-bound water molecule, shedding light on previous empirical and theoretical observations that partial hydration of metal−organic framework (MOF) materials containing open metal sites increases their uptake of CO2. The results of the crystallographic study on MOP–gas binding have been rationalized using DFT calculations, yielding individual binding energies for the various pore environments of Cu-1a.
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Oct 2020
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I19-Small Molecule Single Crystal Diffraction
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Diamond Proposal Number(s):
[17170]
Open Access
Abstract: Excellent conversion efficiencies of over 20% and facile cell production have placed hybrid perovskites at the forefront of novel solar cell materials with CH3NH3PbI3 being its archetypal compound. The question why CH3NH3PbI3 has such extraordinary characteristics, particularly a very efficient power conversion from absorbed light to electrical power, is hotly debated with ferroelectricity being a promising candidate. This does, however, afford the crystal structure to be non‐centrosymmetric and we herein present crystallographic evidence as to how the symmetry breaking occurs on a crystallographic, and therefore long‐scale, level. While the molecular cation CH3NH3+ is intrinsically polar, it is heavily disordered and cannot be the sole reason for ferroelectricity. We show that it, nonetheless, plays an important role as it distorts the neighbouring iodide positions from their centrosymmetric positions.
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Oct 2019
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I19-Small Molecule Single Crystal Diffraction
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Diamond Proposal Number(s):
[18193]
Open Access
Abstract: Seven multi-component molecular crystals containing O–H⋯O/O+–H⋯O− and N+–H⋯O− short strong hydrogen bonds (SSHBs) have been engineered by combining substituted organic acids with hydrogen bond acceptor molecules N,N-dimethylurea and isonicotinamide. In these materials, the shortest of the SSHBs are formed in the N,N-dimethylurea set for the ortho/para nitro-substituted organic acids whilst a twisted molecular approach favours the shorter SSHBs N+–H⋯O− in the isonicotinamide set. Temperature dependent proton migration behaviour has been explored in these systems using single crystal synchrotron X-ray diffraction (SCSXRD). By using a protocol which considers a combination of structural information when assessing the hydrogen atom (H-atom) behaviour, including refined H-atom positions alongside heavy atom geometry and Fourier difference maps, temperature dependent proton migration is indicated in two complexes (2: N,N-dimethylurea 2,4-dinitrobenzoic acid 1:1 and 5: isonicotinamide phthalic acid 2:1). We also implement Hirshfeld atom refinement for further confidence in this observation; this highlights the importance of having corroborating trends when applying the SCSXRD technique in these studies. Further insights into the SSHB donor–acceptor distance limit for temperature dependent proton migration are also revealed. For the O–H⋯O/O+–H⋯O− SSHBs, the systems here support the previously proposed maximum limit of 2.45 Å whilst for the charge assisted N+–H⋯O− SSHBs, a limit in the region of 2.55 Å may be suggested.
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Aug 2019
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I19-Small Molecule Single Crystal Diffraction
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Diamond Proposal Number(s):
[8803]
Open Access
Abstract: Nine new molecular complexes of the proton sponge 1,8-bis(dimethylamino)naphthalene (DMAN) with substituted benzoic acid co-formers have been engineered with varying component stoichiometries (1[thin space (1/6-em)]:[thin space (1/6-em)]1, 1[thin space (1/6-em)]:[thin space (1/6-em)]2 or 1[thin space (1/6-em)]:[thin space (1/6-em)]3). These complexes are all ionic in nature, following proton transfer between the acid co-former and DMAN; the extracted proton is held by DMAN in all instances in an intramolecular [N–H⋯N]+ hydrogen bond. A number of structural features are common to all complexes and are found to be tunable in a predictable way using systematic acid co-former substitution. These features include charge-assisted hydrogen bonds formed between acid co-formers in hydrogen bonding motifs consistent with complex stoichiometry, and weak hydrogen bonds which facilitate the crystal packing of DMAN and acid co-former components into a regular motif. Possible crystal structure tuning by co-former substitution can aid the rational design of such materials, offering the potential to target solid-state properties that may be influenced by these interactions
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May 2018
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I05-ARPES
I19-Small Molecule Single Crystal Diffraction
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Diamond Proposal Number(s):
[4924, 6245, 8776, 12226]
Abstract: The mechanism of emergent bulk superconductivity in transition-metal intercalated ZrTe3 is investigated by studying the effect of Ni doping on the band structure and charge density wave (CDW). The study reports theoretical and experimental results in the range of Ni0.01ZrTe3 to Ni0.05ZrTe3. In the highest doped samples, bulk superconductivity with Tc
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Apr 2018
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I19-Small Molecule Single Crystal Diffraction
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Diamond Proposal Number(s):
[8618]
Abstract: The structural characterization of single crystals of di-4-pyridyl-substituted 3,4,9,10-perylenetetracarboxylic diimide reveals a surprising triple helical arrangement. The intermolecular interactions that lead to such an arrangement are investigated by Hirshfeld surface analysis and indicate that the supramolecular structure arises due to a combination of C–H···O interactions and π–π stacking interactions between adjacent perylene diimide (PDI) species. The interplay of these interactions leads to the formation of a tubular structure enclosed by the triple helix of PDI molecules. In contrast, the analogous phenyl-substituted molecule forms a simple one-dimensional stack of PDI molecules which is also unusual in that the perylene core adopts an essentially planar arrangement despite bay substitution.
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Jan 2018
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I19-Small Molecule Single Crystal Diffraction
Mechanical Engineering
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David R.
Allan
,
Harriott
Nowell
,
Sarah A.
Barnett
,
Mark R.
Warren
,
Adrian
Wilcox
,
Jeppe
Christensen
,
Lucy
Saunders
,
Andrew
Peach
,
Mark T.
Hooper
,
Ljubo
Zaja
,
Suren
Patel
,
Leo
Cahill
,
Russell
Marshall
,
Steven
Trimnell
,
Andrew
Foster
,
Trevor
Bates
,
Simon
Lay
,
Mark A.
Williams
,
Paul V.
Hathaway
,
Graeme
Winter
,
Markus
Gerstel
,
Ron
Wooley
Open Access
Abstract: Herein, we describe the development of a novel dual air-bearing fixed-χ diffractometer for beamline I19 at Diamond Light Source. The diffractometer is designed to facilitate the rapid data collections possible with a Dectris Pilatus 2M pixel-array photon-counting detector, while allowing remote operation in conjunction with a robotic sample changer. The sphere-of-confusion is made as small as practicably possible, through the use of air-bearings for both the ω and φ axes. The design and construction of the new instrument is described in detail and an accompanying paper by Johnson et al. (also in this issue) will provide a user perspective of its operation.
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Nov 2017
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I19-Small Molecule Single Crystal Diffraction
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Florian
Moreau
,
Daniil I.
Kolokolov
,
Alexander G.
Stepanov
,
Timothy L.
Easun
,
Anne
Dailly
,
William
Lewis
,
Alexander J.
Blake
,
Harriott
Nowell
,
Matthew J.
Lennox
,
Elena
Besley
,
Sihai
Yang
,
Martin
Schröder
Diamond Proposal Number(s):
[12517]
Abstract: Modulation and precise control of porosity of metal-organic frameworks (MOFs) is of critical importance to their materials function. Here we report modulation of porosity for a series of isoreticular octacarboxylate MOFs, denoted MFM-180 to MFM-185, via a strategy of selective elongation of metal-organic cages. Owing to the high ligand connectivity, these MOFs do not show interpenetration, and are robust structures that have permanent porosity. Interestingly, activated MFM-185a shows a high Brunauer–Emmett–Teller (BET) surface area of 4,734 m2 g−1 for an octacarboxylate MOF. These MOFs show remarkable CH4 and CO2 adsorption properties, notably with simultaneously high gravimetric and volumetric deliverable CH4 capacities of 0.24 g g−1 and 163 vol/vol (298 K, 5–65 bar) recorded for MFM-185a due to selective elongation of tubular cages. The dynamics of molecular rotors in deuterated MFM-180a-d16 and MFM-181a-d16 were investigated by variable-temperature 2H solid-state NMR spectroscopy to reveal the reorientation mechanisms within these materials. Analysis of the flipping modes of the mobile phenyl groups, their rotational rates, and transition temperatures paves the way to controlling and understanding the role of molecular rotors through design of organic linkers within porous MOF materials.
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Mar 2017
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