I03-Macromolecular Crystallography
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Diamond Proposal Number(s):
[19691]
Open Access
Abstract: Coxsackievirus A24 variant (CVA24v) is responsible for several outbreaks and two pandemics of the highly contagious eye infection acute hemorrhagic conjunctivitis (AHC). Currently, neither prevention (vaccines) nor treatments (antivirals) are available for combating this disease. CVA24v attaches to cells by binding Neu5Ac-containing glycans on the surface of cells which facilitates entry. Previously, we have demonstrated that pentavalent Neu5Ac conjugates attenuate CVA24v infection of human corneal epithelial (HCE) cells. In this study, we report on the structure-based design of three classes of divalent Neu5Ac conjugates, with varying spacer lengths, and their effect on CVA24v transduction in HCE cells. In relative terms, the most efficient class of divalent Neu5Ac conjugates are more efficient than the pentavalent Neu5Ac conjugates previously reported.
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Jan 2022
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I03-Macromolecular Crystallography
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Emil
Johansson
,
Rémi
Caraballo
,
Daniel L.
Hurdiss
,
Nitesh
Mistry
,
C. David
Andersson
,
Rebecca F.
Thompson
,
Neil A.
Ranson
,
Georg
Zocher
,
Thilo
Stehle
,
Niklas
Arnberg
,
Mikael
Elofsson
Diamond Proposal Number(s):
[19691]
Open Access
Abstract: Coxsackievirus A24 variant (CVA24v) is the primary causative agent of the highly contagious eye infection designated acute hemorrhagic conjunctivitis (AHC). It is solely responsible for two pandemics and several recurring outbreaks of the disease over the last decades, thus affecting millions of individuals throughout the world. To date, no antiviral agents or vaccines are available for combating this disease, and treatment is mainly supportive. CVA24v utilizes Neu5Ac-containing glycans as attachment receptors facilitating entry into host cells. We have previously reported that pentavalent Neu5Ac conjugates based on a glucose-scaffold inhibit CVA24v infection of human corneal epithelial cells. In this study, we report on the design and synthesis of scaffold-replaced pentavalent Neu5Ac conjugates and their effect on CVA24v cell transduction and the use of cryogenic electron microscopy (cryo-EM) to study the binding of these multivalent conjugates to CVA24v. The results presented here provide insights into the development of Neu5Ac-based inhibitors of CVA24v and, most significantly, the first application of cryo-EM to study the binding of a multivalent ligand to a lectin.
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Aug 2021
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I03-Macromolecular Crystallography
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Emil
Johansson
,
Rémi
Caraballo
,
Nitesh
Mistry
,
Georg
Zocher
,
Weixing
Qian
,
C. David
Andersson
,
Daniel L.
Hurdiss
,
Naresh
Chandra
,
Rebecca
Thompson
,
Lars
Frängsmyr
,
Thilo
Stehle
,
Niklas
Arnberg
,
Mikael
Elofsson
Open Access
Abstract: Coxsackievirus A24 variant (CVA24v) and human adenovirus 37 (HAdV-37) are leading causative agents of the severe and highly contagious ocular infections acute hemorrhagic conjunctivitis and epidemic keratoconjunctivitis, respectively. Currently, neither vaccines nor antiviral agents are available for treating these diseases, which affect millions of individuals worldwide. CVA24v and HAdV-37 utilize sialic acid as attachment receptors facilitating entry into host cells. Previously, we and others have shown that derivatives based on sialic acid are effective in preventing HAdV-37 binding and infection of cells. Here, we designed and synthesized novel pentavalent sialic acid conjugates and studied their inhibitory effect against CVA24v and HAdV-37 binding and infection of human corneal epithelial cells. The pentavalent conjugates are the first reported inhibitors of CVA24v infection, and proved efficient in blocking HAdV-37 binding. Taken together, the pentavalent conjugates presented here form a basis for the development of general inhibitors of these highly contagious ocular pathogens.
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Aug 2020
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I03-Macromolecular Crystallography
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Tobias
Karlberg
,
Peter
Hornyak
,
Ana Filipa
Pinto
,
Stefina
Milanova
,
Mahsa
Ebrahimi
,
Mikael
Lindberg
,
Nikolai
Püllen
,
Axel
Nordström
,
Elinor
Löverli
,
Rémi
Caraballo
,
Emily V.
Wong
,
Katja
Näreoja
,
Ann-Gerd
Thorsell
,
Mikael
Elofsson
,
Enrique M.
De La Cruz
,
Camilla
Björkegren
,
Herwig
Schüler
Diamond Proposal Number(s):
[11265, 15806]
Open Access
Abstract: Pseudomonas are a common cause of hospital-acquired infections that may be lethal. ADP-ribosyltransferase activities of Pseudomonas exotoxin-S and -T depend on 14-3-3 proteins inside the host cell. By binding in the 14-3-3 phosphopeptide binding groove, an amphipathic C-terminal helix of ExoS and ExoT has been thought to be crucial for their activation. However, crystal structures of the 14-3-3β:ExoS and -ExoT complexes presented here reveal an extensive hydrophobic interface that is sufficient for complex formation and toxin activation. We show that C-terminally truncated ExoS ADP-ribosyltransferase domain lacking the amphipathic binding motif is active when co-expressed with 14-3-3. Moreover, swapping the amphipathic C-terminus with a fragment from Vibrio Vis toxin creates a 14-3-3 independent toxin that ADP-ribosylates known ExoS targets. Finally, we show that 14-3-3 stabilizes ExoS against thermal aggregation. Together, this indicates that 14-3-3 proteins activate exotoxin ADP-ribosyltransferase domains by chaperoning their hydrophobic surfaces independently of the amphipathic C-terminal segment.
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Sep 2018
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I04-Macromolecular Crystallography
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Anders E. G.
Lindgren
,
Tobias
Karlberg
,
Torun
Ekblad
,
Sara
Spjut
,
Ann-Gerd
Thorsell
,
C. David
Andersson
,
Ton Tong
Nhan
,
Victor
Hellsten
,
Johan
Weigelt
,
Anna
Linusson
,
Herwig
Schüler
,
Mikael
Elofsson
Diamond Proposal Number(s):
[6603]
Abstract: The racemic 3-(4-oxo-3,4-dihydroquinazolin-2-yl)-N-[1-(pyridin-2-yl)ethyl]propanamide, 1, has previously been identified as a potent but unselective inhibitor of diphtheria toxin-like ADP-ribosyltransferase 3 (ARTD3). Herein we describe synthesis and evaluation of 55 compounds in this class. It was found that the stereochemistry is of great importance for both selectivity and potency and that substituents on the phenyl ring resulted in poor solubility. Certain variations at the meso position were tolerated and caused a large shift in the binding pose. Changes to the ethylene linker that connects the quinazolinone to the amide were also investigated but proved detrimental to binding. By combination of synthetic organic chemistry and structure-based design, two selective inhibitors of ARTD3 were discovered.
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Dec 2013
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I04-Macromolecular Crystallography
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Anders E. G.
Lindgren
,
Tobias
Karlberg
,
Ann-Gerd
Thorsell
,
Mareike
Hesse
,
Sara
Spjut
,
Torun
Ekblad
,
C. David
Andersson
,
Ana Filipa
Pinto
,
Johan
Weigelt
,
Michael O.
Hottiger
,
Anna
Linusson
,
Mikael
Elofsson
,
Herwig
Schüler
Diamond Proposal Number(s):
[6603]
Abstract: Inhibiting ADP-ribosyl transferases with PARP-inhibitors is considered a promising strategy for the treatment of many cancers and ischemia, but most of the cellular targets are poorly characterized. Here, we describe an inhibitor of ADP-ribosyltransferase-3/poly(ADP-ribose) polymerase-3 (ARTD3), a regulator of DNA repair and mitotic progression. In vitro profiling against 12 members of the enzyme family suggests selectivity for ARTD3, and crystal structures illustrate the molecular basis for inhibitor selectivity. The compound is active in cells, where it elicits ARTD3-specific effects at submicromolar concentration. Our results show that by targeting the nicotinamide binding site, selective inhibition can be achieved among the closest relatives of the validated clinical target, ADP-ribosyltransferase-1/poly(ADP-ribose) polymerase-1.
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Jun 2013
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I03-Macromolecular Crystallography
I04-Macromolecular Crystallography
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Diamond Proposal Number(s):
[6683, 1229]
Open Access
Abstract: Thiol peroxidase, Tpx, has been shown to be a target protein of the salicylidene acylhydrazide class of antivirulence compounds. In this study we present the crystal structures of Tpx from Y. pseudotuberculosis (ypTpx) in the oxidised and reduced states, together with the structure of the C61S mutant. The structures solved are consistent with previously solved atypical 2-Cys thiol peroxidases, including that for “forced” reduced states using the C61S mutant. In addition, by investigating the solution structure of ypTpx using small angle X-ray scattering (SAXS), we have confirmed that reduced state ypTpx in solution is a homodimer. The solution structure also reveals flexibility around the dimer interface. Notably, the conformational changes observed between the redox states at the catalytic triad and at the dimer interface have implications for substrate and inhibitor binding. The structural data were used to model the binding of two salicylidene acylhydrazide compounds to the oxidised structure of ypTpx. Overall, the study provides insights into the binding of the salicylidene acylhydrazides to ypTpx, aiding our long-term strategy to understand the mode of action of this class of compounds.
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Feb 2012
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I02-Macromolecular Crystallography
I03-Macromolecular Crystallography
I04-Macromolecular Crystallography
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Abstract: Yersinia pseudotuberculosis is a Gram-negative bacterium that is capable of causing a tuberculosis-like disease in humans and animals, as well as being a model organism for Y. pestis (Robins-Browne & Hartland, 2003[Robins-Browne, R. & Hartland, E. (2003). International Handbook of Foodborne Pathogens, edited by M. D. Miliotis & J. W. Bier, pp. 323-356. New York: Marcel Dekker.]). Thiol peroxidase (Tpx; p20; UniProt accession No. Q66A71) is an atypical 2-Cys peroxiredoxin that uses the redox potential from thioredoxin reductase and thioredoxin I to reduce alkyl hydroperoxides (Baker & Poole, 2003[Baker, L. M. & Poole, L. B. (2003). J. Biol. Chem. 278, 9203-9211.]). Tpx was initially suggested to be localized to the periplasm and to be involved in the removal of lipid hydroxyperoxides produced by oxidative stress (Cha et al., 1995[Cha, M.-K., Kim, H.-K. & Kim, I.-H. (1995). J. Biol. Chem. 270, 28635-28641.]). However, recent studies of fractionated cells show that Tpx is cytoplasmic and is released into the periplasm as a response to stress (Tao, 2008[Tao, K. (2008). FEMS Microbiol. Lett. 289, 41-45.]). Tpx contains three cysteines, two of which (Cys61 and Cys95, with Cys95 being the resolving cysteine) form the redox-active pair (Baker & Poole, 2003[Baker, L. M. & Poole, L. B. (2003). J. Biol. Chem. 278, 9203-9211.]). Despite the presence of a third cysteine, there is no covalent dimerization in the oxidized state as is observed for most 2-Cys peroxiredoxins (Baker & Poole, 2003[Baker, L. M. & Poole, L. B. (2003). J. Biol. Chem. 278, 9203-9211.]). The structure of Tpx from Escherichia coli has been elucidated in the oxidized form and the mutated C61S form (Hall et al., 2009[Hall, A., Sankaran, B., Poole, L. B. & Karplus, P. A. (2009). J. Mol. Biol. 393, 867-881.]; Choi et al., 2003[Choi, J., Choi, S., Cha, M.-K., Kim, I.-H. & Shin, W. (2003). J. Biol. Chem. 278, 49478-49486.]) and shows a sequence identity of approximately 80% to Y. pseudotuberculosis Tpx (ypTpx). Here, we describe the crystallization of ypTpx in three different crystal forms grown under different conditions, as well as the crystallization of the catalytically inactive (Baker & Poole, 2003[Baker, L. M. & Poole, L. B. (2003). J. Biol. Chem. 278, 9203-9211.]) mutant ypTpxC61S.
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Dec 2010
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