I23-Long wavelength MX
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Diamond Proposal Number(s):
[32794]
Open Access
Abstract: Voltage-dependent anion channel 1 (VDAC1) is a key protein in cellular metabolism and apoptosis. Here, we present a protocol to express and purify milligram amounts of recombinant VDAC1 in Escherichia coli. We detail steps for a fluorescence polarization-based high-throughput screening assay using NADH displacement, along with procedures for thermostability, fluorescence polarization, and X-ray crystallography. In this context, we demonstrate how 2-methyl-2,4-pentanediol (MPD), a crystallization reagent, interferes with VDAC1 small-molecule binding, hindering the detection of these ligands in the crystal.
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Mar 2025
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B21-High Throughput SAXS
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Open Access
Abstract: Despite sharing ∼ 43 % sequence identity and structurally similar individual domains, botulinum neurotoxin (BoNT) serotypes A and E have differences in their properties and domain positioning. BoNT/E has a faster onset of action than BoNT/A. This difference is proposed to be due to conformational differences between BoNT/E and the other BoNT serotypes. Where most serotypes have the light chain (LC) and binding domain (BD) on opposite sides of the translocation domain (TD), BoNT/E forms a more compact shape with direct interactions between residues of the LC and BD. To elucidate the structural basis for the different properties of BoNT/A and BoNT/E, biophysical studies including molecular dynamic (MD) simulations, circular dichroism (CD) and small-angle X-ray scattering (SAXS) were applied to BoNT/A, for comparison against previous work on BoNT/E.
MD simulations at six pH values across the toxin’s activation barrier (pH ∼ 5.5), followed by one extra repeat for the pH values below 5.5, revealed a rare event at pH 5 and 5.5 where interactions between a previously identified switch region of BoNT/A and the BD were lost. This hinted at an increased freedom of movement, thus allowing the region to change from α-helical to a β-hairpin. In good agreement with previous work, CD showed a gradual and small loss of helicity as the pH decreased below pH 5.5, stabilising at pH 4.5. Combined with the relative scarcity of structural changes observed by MD in the switch region required for activity, these results may explain the slower onset of action for BoNT/A compared to BoNT/E.
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Mar 2025
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I18-Microfocus Spectroscopy
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Thomas
Barthelay
,
Robert
Gray
,
Howard
Richards
,
Paloma
Rodriguez Santana
,
Sylvia
Britto
,
Kalotina
Geraki
,
Zhenyuan
Xia
,
Johanna
Xu
,
Leif E.
Asp
,
Chris
Bowen
,
Frank
Marken
,
Alexander
Lunt
,
Andrew
Rhead
Diamond Proposal Number(s):
[30127]
Open Access
Abstract: Structural batteries utilise the bifunctionality of carbon fibres to act as a load-bearing structure, but also as a conductive current collector for a battery electrode. Lithium-ion transport during the cycling of structural battery cathodes coated with different morphologies is investigated using Iron X-Ray Absorption Near Edge Spectroscopy (Fe XANES) and correlated to electrochemical performance. Two contrasting morphologies were produced using slurry coating and electrophoretic deposition (EPD) of lithium-iron phosphate (LFP) onto continuous carbon fibres. The ability to study the different structural battery cathode morphologies operando allows for a comparative analysis of their impact on cycling performance. The EPD-coated fibres exhibited a more homogeneous, thinner coating around the fibre compared to the thick, one-sided coating produced using slurry coating. Despite a lower initial capacity and 30 % lithium re-intercalation loss in the first cycle, EPD-coated fibres exhibited more stable capacity retention over time compared to slurry-coated counterparts. Electrochemical Impedance Spectroscopy (EIS) revealed initially high ionic resistance for the EPD-coated fibres, but a larger increase in resistance in the slurry coated electrodes over multiple cycles. This study demonstrated an innovative and novel method of analysing in greater detail, the cycling ability of the coated cathode material on carbon fibres using synchrotron radiation.
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Feb 2025
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I10-Beamline for Advanced Dichroism - scattering
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Abstract: Depth resolved characterization of structural and magnetic profiles of antiferromagnetic/ferromagnetic (AFM/FM) system upon annealing was performed in this work. We studied systems comprising of AFM IrMn
and FM (Co, Fe, Co70Fe30) bilayer structures using magnetometry, polarized neutron reflectometry, soft X-ray magnetic circular dichroism and secondary neutral spectrometry. Structural depth profiles obtained from neutron reflectometry indicate non-homogeneity of the AFM layer even before annealing, which is associated with the migration of manganese to the surface of the sample. Annealing of samples with CoFe and Co layers leads to a slight increase (
5 %) in the migration of manganese, which, however, does not lead to significant degradation of the exchange coupling at the AFM/FM interface. A significantly different picture was observed in the Fe/IrMn
systems where a strong migration of iron into the AFM layer was observed upon annealing of the sample, leading to erosion of the magnetic profile, the formation of a non-magnetic alloy and degradation of the pinning strength. This study can be useful in the optimization of AFM/FM systems in different spintronics devices, including HDD read heads, where thermal annealing is applied at different stages of the device manufacturing process.
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Jan 2025
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I03-Macromolecular Crystallography
I04-1-Macromolecular Crystallography (fixed wavelength)
I04-Macromolecular Crystallography
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Diamond Proposal Number(s):
[17212, 23269]
Open Access
Abstract: Angiotensin-1-converting enzyme (ACE) is a zinc-dependent carboxypeptidase of therapeutic interest for the treatment of hypertension, inflammation and fibrosis. It consists of two homologous N and C catalytic domains, nACE and cACE, respectively. Unfortunately, the current clinically available ACE inhibitors produce undesirable side effects due to the nonselective inhibition of these domains. Through structure-based drug design, we previously identified a series of diprolyl-derived inhibitors (SG3, SG15, SG16, SG17 and SG18) in an attempt to specifically target nACE. Only one compound, SG16, possessed significant nACEselectivity. The previously determined 16-nACE crystal structure (nACE:SG16) suggested interactions with Tyr369 (Phe381 in cACE) are responsible for this selectivity. To better understand the molecular basis for the lack of selectivity in the remaining compounds, we have cocrystallised nACE in complex with SG3, SG15, SG17 and SG18 and cACE in complex with SG3, SG15, SG16 and SG18 and determined their structures at high resolution. Apart from the catalytic residues, these structures further highlight the importance of residues distal to the active site that may play an important role in the design of domain-selective inhibitors of ACE.
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Jan 2025
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I04-Macromolecular Crystallography
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Open Access
Abstract: The mutually antagonistic relationship of atypical protein kinase C (aPKC) and partitioning-defective protein 6 (Par6) with the substrate lethal (2) giant larvae (Lgl) is essential for regulating polarity across many cell types. Although aPKC–Par6 phosphorylates Lgl at three serine sites to exclude it from the apical domain, aPKC–Par6 and Lgl paradoxically form a stable kinase–substrate complex, with conflicting roles proposed for Par6. We report the structure of human aPKCι–Par6α bound to full-length Llgl1, captured through an aPKCι docking site and a Par6PDZ contact. This complex traps a phospho-S663 Llgl1 intermediate bridging between aPKC and Par6, impeding phosphorylation progression. Thus, aPKCι is effectively inhibited by Llgl1pS663 while Llgl1 is captured by aPKCι–Par6. Mutational disruption of the Lgl–aPKC interaction impedes complex assembly and Lgl phosphorylation, whereas disrupting the Lgl–Par6PDZ contact promotes complex dissociation and Lgl phosphorylation. We demonstrate a Par6PDZ-regulated substrate capture-and-release model requiring binding by active Cdc42 and the apical partner Crumbs to drive complex disassembly. Our results suggest a mechanism for mutual regulation and spatial control of aPKC–Par6 and Lgl activities.
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Jan 2025
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I09-Surface and Interface Structural Analysis
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Diamond Proposal Number(s):
[36180]
Abstract: MAX phases are a large and growing family of transition metal-based ternary carbides and (carbo)nitrides, that have also attracted significant attention as precursors for a class of two-dimensional materials referred to as MXenes. The ability to partially substitute elements on the M-, A-, and X-sites of the layered crystal structure has expanded MAX phases to over 340 members known to date. They can be exfoliated to form single- and few-layer MXene sheets by removal of the A-element while maintaining the M- and X-elements of the precursor MAX phase. MXenes are extremely interesting materials with properties that are, among other factors, dependent on their chemical composition and offer a wide array of potential applications, for example for energy conversion. Here, we synthesize hitherto unknown solid solution MAX phases, (V1–yMoy)2AlC (y = 0.0–0.5) and exfoliate all compounds with varying V/Mo ratios into the respective MXenes by hydrothermal treatment with in situ-formed hydrofluoric acid. The delaminated MXenes can be utilized for electrocatalytic reactions, here demonstrated for the hydrogen evolution reaction (HER). As the Mo content within the MXenes increases, electrocatalytic activity for HER improves, peaking at an overpotential of 394 mV at 10 mA cm–2 and a Tafel slope of 129 mV dec–1 for (V0.5Mo0.5)2CTx.
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Jan 2025
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I10-Beamline for Advanced Dichroism - scattering
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Diamond Proposal Number(s):
[32078]
Open Access
Abstract: This study reports the structural and magnetic properties of Mn-doped Bi2Te3
thin films grown by magnetron sputtering. The films exhibit a ferromagnetic response that depends on the Mn doping concentration, as revealed by X-ray magnetic circular dichroism measurements. At an Mn concentration of ∼6.0%, a magnetic moment of (3.48 ± 0.25) μB
/Mn was determined. Structural analysis indicated the presence of a secondary MnTe𝑥
phase, which complicates the interpretation of the magnetic properties. Additionally, the incorporation of Mn ions within the van der Waals gap and substitutional doping on Bi sites contributes to the observed complex magnetic properties. Intriguingly, a decrease in magnetic moment per Mn was observed with increasing Mn concentration, which is consistent with the formation of the intrinsic magnetic topological insulator MnBi2Te4
.
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Jan 2025
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I07-Surface & interface diffraction
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Diamond Proposal Number(s):
[32266]
Abstract: Organic solar cells (OSCs) are attracting significant attention due to their low cost, lightweight, and flexible nature. The introduction of nonfullerene acceptors (NFAs) has propelled OSC development into a transformative era. However, the limited availability of wide band gap polymer donors for NFAs poses a critical challenge, hindering further advancements. This study examines the role of developed wide band gap halogenated pyrrolo[3,4-c]pyrrole-1,3(2H,5H)-dione (PPD)-based polymers, in combination with the Y6 nonfullerene acceptor, in bulk heterojunction (BHJ) OSCs. We first focus on the electronic and absorbance modifications brought about by halogen substitution in PPD-based polymers, revealing how these adjustments influence the HOMO/LUMO energy levels and, subsequently, photovoltaic performance. Despite the increased Voc of halogenated polymers due to the optimal band alignment, power conversion efficiencies (PCEs) were decreased due to suboptimal blend morphologies. We second implemented PPD as a solid additive to PM6:Y6, forming ternary OSCs and further improving the PCE. The study provides a nuanced understanding of the interplay between molecular design, device morphology, and OSC performance and opens insights for future research to achieve an optimal balance between band alignment and favorable blend morphology for high-efficiency OSCs.
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Jan 2025
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I11-High Resolution Powder Diffraction
I19-Small Molecule Single Crystal Diffraction
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Diamond Proposal Number(s):
[30461, 31578]
Abstract: Batteries are a critical technology for the transition to a sustainable energy economy. Rechargeable lithium ion (Li ion) batteries power our electronic devices and electric cars and are needed to store energy generated from renewable sources. The design and discovery of new materials underpins the development of high performing and reliable rechargeable batteries that are long-lasting, cost-effective, fast charging, safe and sustainable. Most Li-ion batteries rely on a liquid electrolyte to conduct ions between the anode and cathode. However, liquid electrolytes can leak and are flammable, which can lead to fires. One solution to this issue is to use a solid electrolyte, and researchers at the University of Liverpool have discovered a solid material with high enough Li ion conductivity to replace the liquid electrolytes in current Li ion battery technology, improving safety and energy capacity. Their work, recently published in Science, used a collaborative computational and experimental workflow, synthesising the material in the laboratory, using synchrotron techniques to determine its structure, and demonstrating it in a battery cell. Their disruptive design approach offers a new route to discover more high-performance materials that rely on the fast motion of ions in solids.
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Jan 2025
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