I03-Macromolecular Crystallography
I04-Macromolecular Crystallography
I24-Microfocus Macromolecular Crystallography
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Iain W.
Mcnae
,
James
Kinkead
,
Divya
Malik
,
Li-hsuan
Yen
,
Martin K.
Walker
,
Chris
Swain
,
Scott P.
Webster
,
Nick
Gray
,
Peter M.
Fernandes
,
Elmarie
Myburgh
,
Elizabeth
Blackburn
,
Ryan
Ritchie
,
Carol
Austin
,
Martin A.
Wear
,
Adrian J.
Highton
,
Andrew J.
Keats
,
Antonio
Vong
,
Jacqueline
Dornan
,
Jeremy C.
Mottram
,
Paul A. M.
Michels
,
Simon
Pettit
,
Malcolm D.
Walkinshaw
Diamond Proposal Number(s):
[9487, 13550]
Open Access
Abstract: The parasitic protist Trypanosoma brucei is the causative agent of Human African Trypanosomiasis, also known as sleeping sickness. The parasite enters the blood via the bite of the tsetse fly where it is wholly reliant on glycolysis for the production of ATP. Glycolytic enzymes have been regarded as challenging drug targets because of their highly conserved active sites and phosphorylated substrates. We describe the development of novel small molecule allosteric inhibitors of trypanosome phosphofructokinase (PFK) that block the glycolytic pathway resulting in very fast parasite kill times with no inhibition of human PFKs. The compounds cross the blood brain barrier and single day oral dosing cures parasitaemia in a stage 1 animal model of human African trypanosomiasis. This study demonstrates that it is possible to target glycolysis and additionally shows how differences in allosteric mechanisms may allow the development of species-specific inhibitors to tackle a range of proliferative or infectious diseases.
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Feb 2021
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I11-High Resolution Powder Diffraction
I20-EDE-Energy Dispersive EXAFS (EDE)
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Longfei
Lin
,
Mengtian
Fan
,
Alena M.
Sheveleva
,
Xue
Han
,
Zhimou
Tang
,
Joseph H.
Carter
,
Ivan
Da Silva
,
Christopher
Parlett
,
Floriana
Tuna
,
Eric J. L.
Mcinnes
,
German
Sastre
,
Svemir
Rudic
,
Hamish
Cavaye
,
Stewart F.
Parker
,
Yongqiang
Cheng
,
Luke L.
Daemen
,
Anibal J.
Ramirez-cuesta
,
Martin P.
Attfield
,
Yueming
Liu
,
Chiu C.
Tang
,
Buxing
Han
,
Sihai
Yang
Diamond Proposal Number(s):
[2359]
Open Access
Abstract: Optimising the balance between propene selectivity, propene/ethene ratio and catalytic stability and unravelling the explicit mechanism on formation of the first carbon–carbon bond are challenging goals of great importance in state-of-the-art methanol-to-olefin (MTO) research. We report a strategy to finely control the nature of active sites within the pores of commercial MFI-zeolites by incorporating tantalum(V) and aluminium(III) centres into the framework. The resultant TaAlS-1 zeolite exhibits simultaneously remarkable propene selectivity (51%), propene/ethene ratio (8.3) and catalytic stability (>50 h) at full methanol conversion. In situ synchrotron X-ray powder diffraction, X-ray absorption spectroscopy and inelastic neutron scattering coupled with DFT calculations reveal that the first carbon–carbon bond is formed between an activated methanol molecule and a trimethyloxonium intermediate. The unprecedented cooperativity between tantalum(V) and Brønsted acid sites creates an optimal microenvironment for efficient conversion of methanol and thus greatly promotes the application of zeolites in the sustainable manufacturing of light olefins.
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Feb 2021
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I03-Macromolecular Crystallography
I04-1-Macromolecular Crystallography (fixed wavelength)
I04-Macromolecular Crystallography
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Declan A.
Gray
,
Joshua B. R.
White
,
Abraham O.
Oluwole
,
Parthasarathi
Rath
,
Amy J.
Glenwright
,
Adam
Mazur
,
Michael
Zahn
,
Arnaud
Basle
,
Carl
Morland
,
Sasha L.
Evans
,
Alan
Cartmell
,
Carol V.
Robinson
,
Sebastian
Hiller
,
Neil A.
Ranson
,
David N.
Bolam
,
Bert
Van Den Berg
Diamond Proposal Number(s):
[13587, 18598]
Open Access
Abstract: In Bacteroidetes, one of the dominant phyla of the mammalian gut, active uptake of large nutrients across the outer membrane is mediated by SusCD protein complexes via a “pedal bin” transport mechanism. However, many features of SusCD function in glycan uptake remain unclear, including ligand binding, the role of the SusD lid and the size limit for substrate transport. Here we characterise the β2,6 fructo-oligosaccharide (FOS) importing SusCD from Bacteroides thetaiotaomicron (Bt1762-Bt1763) to shed light on SusCD function. Co-crystal structures reveal residues involved in glycan recognition and suggest that the large binding cavity can accommodate several substrate molecules, each up to ~2.5 kDa in size, a finding supported by native mass spectrometry and isothermal titration calorimetry. Mutational studies in vivo provide functional insights into the key structural features of the SusCD apparatus and cryo-EM of the intact dimeric SusCD complex reveals several distinct states of the transporter, directly visualising the dynamics of the pedal bin transport mechanism.
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Jan 2021
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I11-High Resolution Powder Diffraction
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Open Access
Abstract: TiO2-based powder materials have been widely studied as efficient photocatalysts for water splitting due to their low cost, photo-responsivity, earthly abundance, chemical and thermal stability, etc. In particular, the recent breakthrough of nitrogen-doped TiO2, which enhances the presence of structural defects and dopant impurities at elevated temperatures, exhibits an impressive visible-light absorption for photocatalytic activity. Although their electronic and optical properties have been extensively studied, the structure-activity relationship and photocatalytic mechanism remain ambiguous. Herein, we report an in-depth structural study of rutile, anatase and mixed phases (commercial P25) with and without nitrogen-doping by variable-temperature synchrotron X-ray powder diffraction. We report that an unusual anisotropic thermal expansion of the anatase phase can reveal the intimate relationship between sub-surface oxygen vacancies, nitrogen-doping level and photocatalytic activity. For highly doped anatase, a new cubic titanium oxynitride phase is also identified which provides important information on the fundamental shift in absorption wavelength, leading to excellent photocatalysis using visible light.
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Jan 2021
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B18-Core EXAFS
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Giovanni
Baccolo
,
Barbara
Delmonte
,
Paul B.
Niles
,
Giannantonio
Cibin
,
Elena
Di Stefano
,
Dariush
Hampai
,
Lindsay
Keller
,
Valter
Maggi
,
Augusto
Marcelli
,
Joseph
Michalski
,
Christopher
Snead
,
Massimo
Frezzotti
Diamond Proposal Number(s):
[7314, 8372, 9050]
Open Access
Abstract: Many interpretations have been proposed to explain the presence of jarosite within Martian surficial sediments, including the possibility that it precipitated within paleo-ice deposits owing to englacial weathering of dust. However, until now a similar geochemical process was not observed on Earth nor in other planetary settings. We report a multi-analytical indication of jarosite formation within deep ice. Below 1000 m depth, jarosite crystals adhering on residual silica-rich particles have been identified in the Talos Dome ice core (East Antarctica) and interpreted as products of weathering involving aeolian dust and acidic atmospheric aerosols. The progressive increase of ice metamorphism and re-crystallization with depth, favours the relocation and concentration of dust and the formation of acidic brines in isolated environments, allowing chemical reactions and mineral neo-formation to occur. This is the first described englacial diagenetic mechanism occurring in deep Antarctic ice and supports the ice-weathering model for jarosite formation on Mars, highlighting the geologic importance of paleo ice-related processes on this planet. Additional implications concern the preservation of dust-related signals in deep ice cores with respect to paleoclimatic reconstructions and the englacial history of meteorites from Antarctic blue ice fields.
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Jan 2021
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B23-Circular Dichroism
I24-Microfocus Macromolecular Crystallography
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Juan F.
Bada Juarez
,
Peter J.
Judge
,
Suliman
Adam
,
Danny
Axford
,
Javier
Vinals
,
James
Birch
,
Tristan O. C.
Kwan
,
Kin Kuan
Hoi
,
Hsin-yung
Yen
,
Anthony
Vial
,
Pierre-emmanuel
Milhiet
,
Carol V.
Robinson
,
Igor
Schapiro
,
Isabel
Moraes
,
Anthony
Watts
Diamond Proposal Number(s):
[19152, 11386, 15222]
Open Access
Abstract: Many transmembrane receptors have a desensitized state, in which they are unable to respond to external stimuli. The family of microbial rhodopsin proteins includes one such group of receptors, whose inactive or dark-adapted (DA) state is established in the prolonged absence of light. Here, we present high-resolution crystal structures of the ground (light-adapted) and DA states of Archaerhodopsin-3 (AR3), solved to 1.1 Å and 1.3 Å resolution respectively. We observe significant differences between the two states in the dynamics of water molecules that are coupled via H-bonds to the retinal Schiff Base. Supporting QM/MM calculations reveal how the DA state permits a thermodynamic equilibrium between retinal isomers to be established, and how this same change is prevented in the ground state in the absence of light. We suggest that the different arrangement of internal water networks in AR3 is responsible for the faster photocycle kinetics compared to homologs.
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Jan 2021
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I03-Macromolecular Crystallography
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Roland
Beckmann
,
Kristian
Jensen
,
Sebastian
Fenn
,
Janina
Speck
,
Katrin
Krause
,
Anastasia
Meier
,
Melanie
Röth
,
Sascha
Fauser
,
Raymond
Kimbung
,
Derek T.
Logan
,
Martin
Steegmaier
,
Hubert
Kettenberger
Diamond Proposal Number(s):
[12427]
Open Access
Abstract: We report the development of a platform of dual targeting Fab (DutaFab) molecules, which comprise two spatially separated and independent binding sites within the human antibody CDR loops: the so-called H-side paratope encompassing HCDR1, HCDR3 and LCDR2, and the L-side paratope encompassing LCDR1, LCDR3 and HCDR2. Both paratopes can be independently selected and combined into the desired bispecific DutaFabs in a modular manner. X-ray crystal structures illustrate that DutaFabs are able to bind two target molecules simultaneously at the same Fv region comprising a VH-VL heterodimer. In the present study, this platform is applied to generate DutaFabs specific for VEGFA and PDGF-BB, which show high affinities, physico-chemical stability and solubility, as well as superior efficacy over anti-VEGF monotherapy in vivo. These molecules exemplify the usefulness of DutaFabs as a distinct class of antibody therapeutics, which is currently being evaluated in patients.
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Jan 2021
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Bikshapathi
Jagga
,
Megan
Edwards
,
Miriam
Pagin
,
Kylie M.
Wagstaffe
,
David
Aragao
,
Noelia
Roman
,
Jeffrey D.
Nanson
,
Shane R.
Raidal
,
Nicole
Dominado
,
Murray
Stewart
,
David A.
Jans
,
Gary R.
Hime
,
Silvia K.
Nicolis
,
Christopher F.
Basler
,
Jade K.
Forwood
Open Access
Abstract: SOX (SRY-related HMG-box) transcription factors perform critical functions in development and cell differentiation. These roles depend on precise nuclear trafficking, with mutations in the nuclear targeting regions causing developmental diseases and a range of cancers. SOX protein nuclear localization is proposed to be mediated by two nuclear localization signals (NLSs) positioned within the extremities of the DNA-binding HMG-box domain and, although mutations within either cause disease, the mechanistic basis has remained unclear. Unexpectedly, we find here that these two distantly positioned NLSs of SOX2 contribute to a contiguous interface spanning 9 of the 10 ARM domains on the nuclear import adapter IMPα3. We identify key binding determinants and show this interface is critical for neural stem cell maintenance and for Drosophila development. Moreover, we identify a structural basis for the preference of SOX2 binding to IMPα3. In addition to defining the structural basis for SOX protein localization, these results provide a platform for understanding how mutations and post-translational modifications within these regions may modulate nuclear localization and result in clinical disease, and also how other proteins containing multiple NLSs may bind IMPα through an extended recognition interface.
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Jan 2021
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I24-Microfocus Macromolecular Crystallography
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Manmohan
Sharma
,
Nipun
Malhotra
,
Manickam
Yogavel
,
Karl
Harlos
,
Bruno
Melillo
,
Eamon
Comer
,
Arthur
Gonse
,
Suhel
Parvez
,
Branko
Mitasev
,
Francis G.
Fang
,
Stuart L.
Schreiber
,
Amit
Sharma
Diamond Proposal Number(s):
[19946]
Open Access
Abstract: The inhibition of Plasmodium cytosolic phenylalanine tRNA-synthetase (cFRS) by a novel series of bicyclic azetidines has shown the potential to prevent malaria transmission, provide prophylaxis, and offer single-dose cure in animal models of malaria. To date, however, the molecular basis of Plasmodium cFRS inhibition by bicyclic azetidines has remained unknown. Here, we present structural and biochemical evidence that bicyclic azetidines are competitive inhibitors of L-Phe, one of three substrates required for the cFRS-catalyzed aminoacylation reaction that underpins protein synthesis in the parasite. Critically, our co-crystal structure of a PvcFRS-BRD1389 complex shows that the bicyclic azetidine ligand binds to two distinct sub-sites within the PvcFRS catalytic site. The ligand occupies the L-Phe site along with an auxiliary cavity and traverses past the ATP binding site. Given that BRD1389 recognition residues are conserved amongst apicomplexan FRSs, this work lays a structural framework for the development of drugs against both Plasmodium and related apicomplexans.
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Jan 2021
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I24-Microfocus Macromolecular Crystallography
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Open Access
Abstract: Actin polymerization provides force for vital processes of the eukaryotic cell, but our understanding of actin dynamics and energetics remains limited due to the lack of high-quality probes. Most current probes affect dynamics of actin or its interactions with actin-binding proteins (ABPs), and cannot track the bound nucleotide. Here, we identify a family of highly sensitive fluorescent nucleotide analogues structurally compatible with actin. We demonstrate that these fluorescent nucleotides bind to actin, maintain functional interactions with a number of essential ABPs, are hydrolyzed within actin filaments, and provide energy to power actin-based processes. These probes also enable monitoring actin assembly and nucleotide exchange with single-molecule microscopy and fluorescence anisotropy kinetics, therefore providing robust and highly versatile tools to study actin dynamics and functions of ABPs.
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Jan 2021
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