I06-Nanoscience
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C.
Schmitt
,
L.
Sanchez-Tejerina
,
M.
Filianina
,
F.
Fuhrmann
,
H.
Meer
,
R.
Ramos
,
F.
Maccherozzi
,
D.
Backes
,
E.
Saitoh
,
G.
Finocchio
,
L.
Baldrati
,
M.
Klaui
Diamond Proposal Number(s):
[22448]
Abstract: The understanding of antiferromagnetic domain walls, which are the interface between domains with different Néel order orientations, is a crucial aspect to enable the use of antiferromagnetic materials as active elements in future spintronic devices. In this work, we demonstrate that in antiferromagnetic NiO/Pt bilayers arbitrary-shaped structures can be generated by switching driven by electrical current pulses. The generated domains are T domains, separated from each other by a domain wall whose spins are pointing toward the average direction of the two T domains rather than the common axis of the two planes. Interestingly, this direction is the same for the whole domain wall indicating the absence of strong Lifshitz invariants. The domain wall can be micromagnetically modeled by strain distributions in the NiO thin film induced by the MgO substrate, deviating from the bulk anisotropy. From our measurements we determine the domain-wall width to have a full width at half maximum of
Δ
=
98
±
10
nm, demonstrating strong confinement.
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May 2023
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I03-Macromolecular Crystallography
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Simon
Stael
,
Igor
Sabljic
,
Dominique
Audenaert
,
Thilde
Andersson
,
Liana
Tsiatsiani
,
Robert P.
Kumpf
,
Andreu
Vidal-Albalat
,
Cecilia
Lindgren
,
Dominique
Vercammen
,
Silke
Jacques
,
Long
Nguyen
,
Maria
Njo
,
Álvaro D.
Fernández-Fernández
,
Tine
Beunens
,
Evy
Timmerman
,
Kris
Gevaert
,
Marc
Van Montagu
,
Jerry
Stahlberg
,
Peter V.
Bozhkov
,
Anna
Linusson
,
Tom
Beeckman
,
Frank
Van Breusegem
Diamond Proposal Number(s):
[23773]
Abstract: Metacaspases are part of an evolutionarily broad family of multifunctional cysteine proteases, involved in disease and normal development. As the structure–function relationship of metacaspases remains poorly understood, we solved the X-ray crystal structure of an Arabidopsis thaliana type II metacaspase (AtMCA-IIf) belonging to a particular subgroup not requiring calcium ions for activation. To study metacaspase activity in plants, we developed an in vitro chemical screen to identify small molecule metacaspase inhibitors and found several hits with a minimal thioxodihydropyrimidine-dione structure, of which some are specific AtMCA-IIf inhibitors. We provide mechanistic insight into the basis of inhibition by the TDP-containing compounds through molecular docking onto the AtMCA-IIf crystal structure. Finally, a TDP-containing compound (TDP6) effectively hampered lateral root emergence in vivo, probably through inhibition of metacaspases specifically expressed in the endodermal cells overlying developing lateral root primordia. In the future, the small compound inhibitors and crystal structure of AtMCA-IIf can be used to study metacaspases in other species, such as important human pathogens, including those causing neglected diseases.
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May 2023
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I11-High Resolution Powder Diffraction
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Abstract: Magnesium sulfate hydrates are considered important rock-forming minerals on the outer three Galilean moons of Jupiter (i.e., Europa, Ganymede, Callisto) and, alongside ferrous sulfate hydrates, are promising candidate minerals for the widespread sulfate deposits that occur in the equatorial region of Mars. In such extraterrestrial environments, these minerals experience extreme high-pressure conditions in the interiour of the Galilean moons and low temperature conditions on the surface of these moons and Mars. The aim of this thesis is to understand the structural stability, compressibility, and thermal expansion of these compounds in such extreme environments and aid their identification in ongoing and future space missions. Most magnesium sulfate hydrates lack accurate reference elastic tensors, which hinders their seismological identification in lander missions on the icy moons of the outer solar system, as envisioned for the near future. In this thesis, the accuracy of recent advancements in density functional theory to predict the compressibility and elastic constants of icy satellite candidate minerals (i.e., epsomite (MgSO₄·7H₂O), gypsum (CaSO₄·2H₂O), carbon dioxide (CO₂), and benzene (C₆H₆)) was assessed by benchmarking them against experimental reference data from the literature. Key findings are that density functional theory calculations do not yield elastic constants accurate enough to be used as a reference for the seismic exploration of icy moons. However, the bulk compressibility of such materials is very accurately reproduced by density functional theory, which was therefore used to predict the compressibility of the icy satellite candidate minerals starkeyite (MgSO₄·4H₂O) and cranswickite (MgSO₄·4H₂O). Knowledge of the compressibility of such minerals is critical to model mantle processes (e.g., salt diaprisim, plate tectonics, subduction) and the density structure of the outer three Galilean moons. The thermal expansion and structural stability of three sulfate minerals (i.e., rozenite (FeSO₄·4H₂O), starkeyite, and cranswickite) was characterised for the first time using neutron diffraction. Cranswickite transforms to starkeyite at 330 K, well above the maximum surface temperature of 308 K hitherto reported on Mars. Starkeyite likely undergoes a structural phase transition at around 245 K. The structure of this proposed low-temperature polymorph could not be determined but would be of great interest since the temperature drops below 245 K on equatorial Mars at night-time. Starkeyite was also studied by means of synchrotron X-ray diffraction but suffered radiation damage. No phase transition was observed in rozenite from 290 – 21 K, which contrasts with Raman data reported in the literature, where sharpening of vibrational modes upon cooling was misinterpreted as mode splitting and evidence for two phase transitions at temperatures relevant to the Martian surface. First-principles phonon frequency calculations provide evidence supporting the absence of vibrational mode splitting. A workflow to obtain reliable reference Raman spectra for space exploration was proposed and an optical centre stick for the simultaneous acquisition of neutron diffraction and Raman spectroscopy data at the HRPD instrument was commissioned. Lastly, the structure of a polymorph of hexahydrite (MgSO₄·6H₂O), most recently proposed in the literature, was shown to be unambiguously wrong.
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May 2023
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I04-Macromolecular Crystallography
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Diamond Proposal Number(s):
[23620]
Open Access
Abstract: Background: Hyaluronic acid (HA) is a major polysaccharide component of the extracellular matrix. HA has essential functions in tissue architecture and the regulation of cell behaviour. HA turnover needs to be finely balanced. Increased HA degradation is associated with cancer, inflammation, and other pathological situations. Transmembrane protein 2 (TMEM2) is a cell surface protein that has been reported to degrade HA into ~5 kDa fragments and play an essential role in systemic HA turnover.
Methods: We produced the soluble TMEM2 ectodomain (residues 106-1383; sTMEM2) in human embryonic kidney cells (HEK293) and determined its structure using X-ray crystallography. We tested sTMEM2 hyaluronidase activity using fluorescently labelled HA and size fractionation of reaction products. We tested HA binding in solution and using a glycan microarray.
Results: Our crystal structure of sTMEM2 confirms a remarkably accurate prediction by AlphaFold. sTMEM2 contains a parallel β-helix typical of other polysaccharide-degrading enzymes, but an active site cannot be assigned with confidence. A lectin-like domain is inserted into the β-helix and predicted to be functional in carbohydrate binding. A second lectin-like domain at the C-terminus is unlikely to bind carbohydrates. We did not observe HA binding in two assay formats, suggesting a modest affinity at best. Unexpectedly, we were unable to observe any HA degradation by sTMEM2. Our negative results set an upper limit for kcat of approximately 10-5 min-1.
Conclusions: Although sTMEM2 contains domain types consistent with its suggested role in TMEM2 degradation, its hyaluronidase activity was undetectable. HA degradation by TMEM2 may require additional proteins and/or localisation at the cell surface.
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May 2023
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I07-Surface & interface diffraction
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Daniel T. W.
Toolan
,
Michael P.
Weir
,
Shuangqing
Wang
,
Simon A.
Dowland
,
Zhilong
Zhang
,
James
Xiao
,
Jonathan
Rawle
,
Neil
Greenham
,
Richard
Friend
,
Akshay
Rao
,
Richard A. L.
Jones
,
Anthony J.
Ryan
Diamond Proposal Number(s):
[23587]
Open Access
Abstract: Hybrid small-molecule organic semiconductor / quantum dot blend films are attractive for high efficiency low-cost solar energy harvesting devices. Understanding and controlling the self-assembly of the organic semiconductor and quantum dots is crucial in optimising device performance, not only at a lab-scale but for large-scale high-throughput printing and coating methods. Here, in situ grazing incidence X-ray scattering (GIXS) is employed in order to gain direct insights into how small-molecule organic semiconductor / quantum dot blends self-assemble during blade coating. Results show that for two different archetypal organic small molecule:quantum dot blends, small-molecule crystallisation may either occur spontaneously or be mediated by the formation of quantum dot aggregates. Irrespective of the initial crystallisation route, the small-molecule crystallisation acts to exclude the quantum dot impurities from the growing crystalline matrix phase. These results provide important fundamental understanding of structure formation of small organic molecule:quantum dot films prepared via solution processing routes, compatible with large scale deposition manufacturing.
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May 2023
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Qi
Xue
,
Ching Kit Tommy
Wun
,
Tianxiang
Chen
,
Shogo
Kawaguchi
,
Sarah
Day
,
Chiu C.
Tang
,
Tai-Sing
Wu
,
Yun-Liang
Soo
,
Cong
Lin
,
Yung-Kang
Peng
,
Jun
Yin
,
Tsz Woon Benedict
Lo
Abstract: Supported bimetallic dual-atom catalysts (DACs) have been regarded as a promising class of materials for small molecule activation, but their syntheses remain challenging. Here, we report the controlled synthesis of supported Cu,Fe DACs on the ZrO6O4 secondary building units of UiO-66-NH2 which allows the efficient activation of O2. Remarkably high product selectivity (>92%) towards benzaldehyde over our model photocatalytic styrene oxidation reaction has been achieved. The superior reactivity has been attributed to the well-balanced synergy between the electronic and steric characteristics, which enables efficient O2 activation by the sterically restrained Cu and Fe sites in proximity for the formation of the bridging peroxy group. This bridging peroxy group facilitates the selective oxidation of styrene akin to many peroxide-based oxidants. The confined microporous environment allows the control of the electronic and geometric properties of the DACs, which subsequently sheds light towards more precise atomistic engineering that approaches the conventional inorganic metal(s)-complex counterparts.
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May 2023
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Ralf F.
Ziesche
,
Thomas M. M.
Heenan
,
Pooja
Kumari
,
Jarrod
Williams
,
Weiqun
Li
,
Matthew E.
Curd
,
Timothy L.
Burnett
,
Ian
Robinson
,
Dan J. L.
Brett
,
Matthias J.
Ehrhardt
,
Paul D.
Quinn
,
Layla B.
Mehdi
,
Philip J.
Withers
,
Melanie
Britton
,
Nigel D.
Browning
,
Paul R.
Shearing
Open Access
Abstract: Demand for low carbon energy storage has highlighted the importance of imaging techniques for the characterization of electrode microstructures to determine key parameters associated with battery manufacture, operation, degradation, and failure both for next generation lithium and other novel battery systems. Here, recent progress and literature highlights from magnetic resonance, neutron, X-ray, focused ion beam, scanning and transmission electron microscopy are summarized. Two major trends are identified: First, the use of multi-modal microscopy in a correlative fashion, providing contrast modes spanning length- and time-scales, and second, the application of machine learning to guide data collection and analysis, recognizing the role of these tools in evaluating large data streams from increasingly sophisticated imaging experiments.
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May 2023
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Swagatha
Ghosh
,
Doris
Zorić
,
Peter
Dahl
,
Monika
Bjelčić
,
Jonatan
Johannesson
,
Emil
Sandelin
,
Per
Borjesson
,
Alexander
Bjorling
,
Analia
Banacore
,
Petra
Edlund
,
Oskar
Aurelius
,
Mirko
Milas
,
Jie
Nan
,
Anastasya
Shilova
,
Ana
Gonzalez
,
Uwe
Mueller
,
Gisela
Branden
,
Richard
Neutze
Open Access
Abstract: Serial femtosecond crystallography was initially developed for room-temperature X-ray diffraction studies of macromolecules at X-ray free electron lasers. When combined with tools that initiate biological reactions within microcrystals, time-resolved serial crystallography allows the study of structural changes that occur during an enzyme catalytic reaction. Serial synchrotron X-ray crystallography (SSX), which extends serial crystallography methods to synchrotron radiation sources, is expanding the scientific community using serial diffraction methods. This report presents a simple flow cell that can be used to deliver microcrystals across an X-ray beam during SSX studies. This device consists of an X-ray transparent glass capillary mounted on a goniometer-compatible 3D-printed support and is connected to a syringe pump via lightweight tubing. This flow cell is easily mounted and aligned, and it is disposable so can be rapidly replaced when blocked. This system was demonstrated by collecting SSX data at MAX IV Laboratory from microcrystals of the integral membrane protein cytochrome c oxidase from Thermus thermophilus, from which an X-ray structure was determined to 2.12 Å resolution. This simple SSX platform may help to lower entry barriers for non-expert users of SSX.
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Apr 2023
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B16-Test Beamline
DIAD-Dual Imaging and Diffraction Beamline
E01-JEM ARM 200CF
E02-JEM ARM 300CF
I08-Scanning X-ray Microscopy beamline (SXM)
I12-JEEP: Joint Engineering, Environmental and Processing
I13-1-Coherence
I13-2-Diamond Manchester Imaging
I14-Hard X-ray Nanoprobe
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Open Access
Abstract: Hard dental tissues possess a complex hierarchical structure that is particularly evident in enamel, the most mineralised substance in the human body. Its complex and interlinked organisation at the Ångstrom (crystal lattice), nano-, micro-, and macro-scales is the result of evolutionary optimisation for mechanical and functional performance: hardness and stiffness, fracture toughness, thermal, and chemical resistance. Understanding the physical–chemical–structural relationships at each scale requires the application of appropriately sensitive and resolving probes. Synchrotron X-ray techniques offer the possibility to progress significantly beyond the capabilities of conventional laboratory instruments, i.e., X-ray diffractometers, and electron and atomic force microscopes. The last few decades have witnessed the accumulation of results obtained from X-ray scattering (diffraction), spectroscopy (including polarisation analysis), and imaging (including ptychography and tomography). The current article presents a multi-disciplinary review of nearly 40 years of discoveries and advancements, primarily pertaining to the study of enamel and its demineralisation (caries), but also linked to the investigations of other mineralised tissues such as dentine, bone, etc. The modelling approaches informed by these observations are also overviewed. The strategic aim of the present review was to identify and evaluate prospective avenues for analysing dental tissues and developing treatments and prophylaxis for improved dental health.
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Apr 2023
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Open Access
Abstract: All-optical control of terahertz pulses is essential for the development of optoelectronic devices for next-generation quantum technologies. Despite substantial research in THz generation methods, polarization control remains difficult. Here, we demonstrate that by exploiting band structure topology, both helicity-dependent and helicity-independent THz emission can be generated from nanowires of the topological Dirac semimetal Cd3As2. We show that narrowband THz pulses can be generated at oblique incidence by driving the system with optical (1.55 eV) pulses with circular polarization. Varying the incident angle also provides control of the peak emission frequency, with peak frequencies spanning 0.21–1.40 THz as the angle is tuned from 15 to 45°. We therefore present Cd3As2 nanowires as a promising novel material platform for controllable terahertz emission.
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Apr 2023
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