I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[21323, 20839, 23049]
Open Access
Abstract: The coprecipitation of organic carbon with iron minerals is important for its preservation in soils and sediments, but the mechanisms for carbon-iron interactions and thus the controls on organic carbon cycling are far from understood. Here we coprecipitate carboxylic acids with iron (oxyhydr)oxide ferrihydrite and use near-edge X-ray absorption fine structure spectroscopy and wet chemical treatments to determine the relationship between sequestration mechanism and organic carbon stability against its release and chemical oxidative remineralisation. We show that organic carbon sequestration, stabilisation and persistence increase with an increasing number of carboxyl functional groups. We suggest that carboxyl-richness provides an important control on organic carbon preservation in the natural environment. Our work offers a mechanistic basis for understanding the stability and persistence of organic carbon in soils and sediments, which might be used to develop an overarching relationship between organic functional group-richness, mineral interactions and organic carbon preservation in the Earth system.
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Nov 2021
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B24-Cryo Soft X-ray Tomography
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Diamond Proposal Number(s):
[24622]
Open Access
Abstract: Active Virosomes (AVs) are derivatives of viruses, broadly similar to ‘parent’ pathogens, with an outer envelope that contains a bespoke genome coding for 4–5 viral proteins capable of eliciting an antigenic response. AVs are essentially novel vaccine formulations that present on their surface selected viral proteins as antigens. Once administered, they elicit an initial “anti-viral” immune response. AVs are also internalised by host cells where their cargo viral genes are used to express viral antigen(s) intracellularly. These can then be transported to the host cell surface resulting in a second wave of antigen exposure and a more potent immuno-stimulation. A new 3D correlative microscopy approach is used here to provide a robust analytical method for characterisation of Zika and Chikungunya-derivatised AV populations including vesicle size distribution and variations in antigen loading. Manufactured batches were compared to assess the extent and nature of batch-to-batch variations. We also show preliminary results that verify antigen expression on the surface of host cells. We present here a reliable and efficient high-resolution 3D imaging regime that allows the evaluation of the microstructure and biochemistry of novel vaccine formulations such as AVs.
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Aug 2021
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B24-Cryo Soft X-ray Tomography
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Diamond Proposal Number(s):
[21046, 18314]
Abstract: Researchers have developed a new technique for studying cells in their native state. The goal was to obtain high-quality imaging data from cells without the need for sectioning or chemical fixation. The new method avoids any treatment that would disturb cell structure, so that no artefacts (errors) are introduced into the images.
To demonstrate this novel correlative microscopy platform’s effectiveness, the team studied the early stages of cell infection by reoviruses. Although the specific viruses have been studied extensively, there is a debate regarding the method of infection. This research focused on the way that the virus escapes from vesicles, a required step for replication. At beamline B24, using a correlative imaging approach by combining soft X-ray tomography with super resolution microscopy in cryogenic conditions, the team tracked the infection mechanism. The results revealed that the virus had already escaped from the host vesicles two hours after infection, with the vesicles preserving their circular shape, suggesting a gentle, pore-based exit mechanism for the virus.
Reoviruses are valuable tools that could be engineered to express proteins and have the potential to be used in vaccines. Knowing the infection mechanism will facilitate their handling and manipulation for biomedical purposes. The new imaging platform has also been used to validate anticancer compounds, study cell structure during development and investigate clearance of human pathogenic microorganism by immune host cells. The work is the outcome of a collective effort between Diamond Light Source and research groups and facilities across Europe, including the University of Oxford, Heidelberg University Hospital, the Université de Nantes and CryoCapCell.
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Jul 2021
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I08-Scanning X-ray Microscopy beamline (SXM)
I14-Hard X-ray Nanoprobe
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Diamond Proposal Number(s):
[15230, 15854, 20809, 24526, 24531]
Abstract: Parkinson’s disease causes the loss of a particular group of brain cells, the neurons that produce the neurotransmitter dopamine. As these cells contain a dark pigment, neuromelanin, the change is evident from the loss of pigment in this brain region. Characterisation of neuromelanin in tissue remains dependent on visible pigmentation. Faint pigmentation may be interpreted as cell loss, and so contrast-
enhancing stains are commonly used. However, this staining constrains further chemical analysis of the tissue.
Researchers explored the use of synchrotron X-ray microscopy to visualise neuromelanin without relying on visible pigmentation or chemical staining. They performed combined imaging and spectroscopy (spectromicroscopy) on Diamond Light Source’s Scanning X-ray Microscopy beamline (I08), allowing the creation of images from distinct X-ray absorption features. Nanoscale spatial resolution using soft (low energy) X-rays allowed the researchers to probe the organic structure of neuromelanin to seek distinguishing spectral features. This revealed a characteristic feature in the absorption spectrum for neuromelanin. The team used this feature to create maps of neuromelanin distributions, which matched those observed in stained tissue sections.
The team also used nanoscale X-ray Fluorescence (XRF) with hard (high energy) X-rays on the Hard X-ray Nanoprobe beamline (I14) to discover a signature for identifying neuromelanin. This showed that neuromelanin could be identified by its elevated sulfur content. However, this approach is not as specific to neuromelanin as the soft X-ray method. The discovery of the soft X-ray neuromelanin signature offers significant potential for non-destructive studies of the relationships between depigmentation, metal binding and neurodegeneration in Parkinson’s disease.
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Jul 2021
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[21587]
Abstract: A charcoal-like product known as ‘biochar’ can be produced from agricultural waste biomass such as nutshells. One conversion method is pyrolysis, a process that involves heating the waste in the absence of oxygen. During pyrolysis, changes in the size and shape (morphology) of particles increase the surface area of the biomass. This surface area controls how biochar binds to (adsorbs)
pollutants, speeds up chemical reactions, and stores energy. A lack of understanding of how biomass morphology changes during biochar production makes it difficult to tailor biochar properties for specific applications.
Facilities at the Diamond Manchester Imaging Branchline (I13-2) enabled a team of researchers to conduct rapid high-resolution X-ray imaging of biomass. This allowed real-time tracking of particle morphology and porosity during pyrolysis. The results showed that the morphology and porosity of different nutshells evolved differently during pyrolysis. However, these differences were less pronounced in biomass pre-soaked with an alkaline solution. Almond shells shrank more but gained less porosity than walnut shells, which have thicker- walled cells on average. The results suggest that the difference is related to how heat penetrates particles of biomass during pyrolysis. Porosity was found to accumulate towards the centre of particles during pyrolysis for the same reason.
The ability to customise biochar morphology would benefit its many environmental applications. These include removing pollutants from air, water, and soil; speeding up chemical reactions; and even storing energy. Tracking the morphology of biomass during biochar production is the first step towards achieving this.
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Jul 2021
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B18-Core EXAFS
I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[20567, 20204]
Open Access
Abstract: Understanding the potential of nanomaterials (NMs) to cross the blood–brain barrier (BBB), as a function of their physicochemical properties and subsequent behavior, fate, and adverse effect beyond that point, is vital for evaluating the neurological effects arising from their unintentional entry into the brain, which is yet to be fully explored. This is not only due to the complex nature of the brain but also the existing analytical limitations for characterization and quantification of NMs in the complex brain environment. By using a fit-for-purpose analytical workflow and an in vitro BBB model, we show that the physiochemical properties of metallic NMs influence their biotransformation in biological matrices, which in turn modulates the transport form, efficiency, amounts, and pathways of NMs through the BBB and, consequently, their neurotoxicity. The data presented here will support in silico modeling and prediction of the neurotoxicity of NMs and facilitate the tailored design of safe NMs.
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Jul 2021
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[23583]
Abstract: Organic microfossils in Meso- and Neoproterozoic rocks are of key importance to track the emergence and evolution of eukaryotic life. An increasing number of studies combine Raman spectroscopy with synchrotron-based methods to characterize these microfossils. A recurring observation is that Raman spectra of organic microfossils show negligible variation on a sample scale and that variation between different samples can be explained by differences in thermal maturation or in the biologic origin of organic precursor material. There is a paucity of work, however, that explores the extent to which the petrographic framework and diagenetic processes might influence the chemical structure of organic materials. We present a detailed Raman spectroscopy-based study of a complex organic microfossil assemblage in the ca. 1 Ga old Angmaat Formation, Baffin Island, Canada. This formation contains abundant early diagenetic chert that preserves silicified microbial mats with numerous, readily identifiable organic microfossils. Individual chert beds show petrographic differences with discrete episodes of cementation and recrystallization. Raman spectroscopy reveals measurable variation of organic maturity between samples and between neighboring organic microfossils of the same taxonomy and taphonomic state. Scanning transmission X-ray microscopy performed on taphonomically similar coccoidal microfossils from the same thin section shows distinct chemical compositions, with varying ratios of aromatic compounds to ketones and phenols. Such observations imply that geochemical variation of organic matter is not necessarily coupled to thermal alteration or organic precursor material. Variation of the Raman signal across single samples is most likely linked to the diagenetic state of analyzed materials and implies an association between organic preservation and access to diagenetic fluids. Variation in the maturity of individual microfossils may be a natural outcome of local diagenetic processes and potentially exceeds differences derived from precursor organic material. These observations stress the importance of detailed in situ characterization.
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Jul 2021
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I08-Scanning X-ray Microscopy beamline (SXM)
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James
Everett
,
Frederik
Lermyte
,
Jake
Brooks
,
Vindy
Tjendana-Tjhin
,
Germán
Plascencia-Villa
,
Ian
Hands-Portman
,
Jane M.
Donnelly
,
Kharmen
Billimoria
,
George
Perry
,
Xiongwei
Zhu
,
Peter J.
Sadler
,
Peter B.
O'Connor
,
Joanna F.
Collingwood
,
Neil D.
Telling
Diamond Proposal Number(s):
[15854]
Open Access
Abstract: The chemistry of copper and iron plays a critical role in normal brain function. A variety of enzymes and proteins containing positively charged Cu+, Cu2+, Fe2+, and Fe3+ control key processes, catalyzing oxidative metabolism and neurotransmitter and neuropeptide production. Here, we report the discovery of elemental (zero–oxidation state) metallic Cu0 accompanying ferromagnetic elemental Fe0 in the human brain. These nanoscale biometal deposits were identified within amyloid plaque cores isolated from Alzheimer’s disease subjects, using synchrotron x-ray spectromicroscopy. The surfaces of nanodeposits of metallic copper and iron are highly reactive, with distinctly different chemical and magnetic properties from their predominant oxide counterparts. The discovery of metals in their elemental form in the brain raises new questions regarding their generation and their role in neurochemistry, neurobiology, and the etiology of neurodegenerative disease.
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Jun 2021
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I08-Scanning X-ray Microscopy beamline (SXM)
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Giovanni
De Giudici
,
Carlo
Meneghini
,
Carla
Buosi
,
Ilaria
Carlomagno
,
Giuliana
Aquilanti
,
Tohru
Araki
,
Diana E.
Bedolla
,
Maria Antonietta
Casu
,
Antonietta
Cherchi
,
Alessandra
Gianoncelli
,
Antonella
Iadecola
,
Andrei C.
Kuncser
,
V. Adrian
Maraloiu
,
Olivier
Mathon
,
Valentina
Rimondi
,
Pierpaolo
Zuddas
,
Daniela
Medas
Diamond Proposal Number(s):
[16496]
Abstract: Biominerals are widespread in Nature and they precipitate to respond to different physiological purposes. A broad knowledge of their chemical and structural properties offers a unique opportunity to improve our capability to reconstruct actual and paleoenvironment. In this work, we show two case studies, bivalves and foraminifera grown in polluted sites that were characterized by applying different and complementary synchrotron radiation-based investigation techniques, mainly focused on the investigation of Zn incorporation in the biomineralized shells. Using scanning transmission X-ray microscopy (STXM) and X-ray micro-fluorescence (µ-XRF), we found the colocalization of elements across the shells, while we obtained information on chemical speciation of Zn by applying X-ray absorption spectroscopy (XAS). Noticeably, instead of metal dispersion in the Ca-carbonate shells, we found traces of several independent phases, in particular for Zn, dispersed generally as microscopic minerals. This work provides fundamental insight into the structural properties, coordinative and chemical environment of some marine biominerals. This new knowledge is fundamental to understand the biogeochemical processes and to develop effective environmental proxies.
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May 2021
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B24-Cryo Soft X-ray Tomography
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Nina
Vyas
,
Nina
Perry
,
Chidinma A.
Okolo
,
Ilias
Kounatidis
,
Thomas M.
Fish
,
Kamal L.
Nahas
,
Archana
Jadhav
,
Mohamed A.
Koronfel
,
Johannes
Groen
,
Eva
Pereiro
,
Ian M.
Dobbie
,
Maria
Harkiolaki
Diamond Proposal Number(s):
[25512]
Open Access
Abstract: Three-dimensional (3D) structured illumination microscopy (SIM) allows imaging of fluorescently labelled cellular structures at higher resolution than conventional fluorescence microscopy. This super-resolution (SR) technique enables visualization of molecular processes in whole cells and has the potential to be used in conjunction with electron microscopy and X-ray tomography to correlate structural and functional information. A SIM microscope for cryogenically preserved samples (cryoSIM) has recently been commissioned at the correlative cryo-imaging beamline B24 at the UK synchrotron.
It was designed specifically for 3D imaging of biological samples at cryogenic temperatures in a manner compatible with subsequent imaging of the same samples by X-ray microscopy methods such as cryo-soft X-ray tomography. This video article provides detailed methods and protocols for successful imaging using the cryoSIM. In addition to instructions on the operation of the cryoSIM microscope, recommendations have been included regarding the choice of samples, fluorophores, and parameter settings. The protocol is demonstrated in U2OS cell samples whose mitochondria and tubulin have been fluorescently labelled.
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May 2021
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