I19-Small Molecule Single Crystal Diffraction
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Diamond Proposal Number(s):
[22240]
Abstract: Conventional redox mediators based on metal coordination complexes undergo electron transfer through the change in oxidation state of the metal center. However, electron transfer kinetics are offset toward preferred oxidation states when preorganized ligands constrain the reorganization of the coordination sphere. In contrast, we report here on dimeric copper(II/I) redox couples, wherein the extent of oxidation/reduction of two metal centers dictates the dynamic formation of dimer and monomer complexes: the dimeric (Cu(I))2 transitions to monomers of Cu(II). The bis(thiazole/pyrrole)-bipyridine tetradentate ligands stabilize both oxidation states of the unique redox systems. The dynamic dimer redox mediators offer a viable two-electron redox mechanism to develop efficient hybrid solar cells through inhibited recombination and rapid charge transport. Density functional theory calculations reveal inner reorganization energies for single-electron transfer as low as 0.27 eV, marking the dimeric complexes superior redox systems over single complexes as liquid and potentially solid-state electrolytes.
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Nov 2021
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I23-Long wavelength MX
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Matthew
Herdman
,
Andriko
Von Kugelgen
,
Danguole
Kureisaite-Ciziene
,
Ramona
Duman
,
Kamel
El Omari
,
Elspeth F.
Garman
,
Andreas
Kjaer
,
Dimitrios
Kolokouris
,
Jan
Lowe
,
Armin
Wagner
,
Phillip J.
Stansfeld
,
Tanmay A. M.
Bharat
Open Access
Abstract: Surface layers (S-layers) are proteinaceous crystalline coats that constitute the outermost component of most prokaryotic cell envelopes. In this study, we have investigated the role of metal ions in the formation of the Caulobacter crescentus S-layer using high-resolution structural and cell biology techniques, as well as molecular simulations. Utilizing optical microscopy of fluorescently tagged S-layers, we show that calcium ions facilitate S-layer lattice formation and cell-surface binding. We report all-atom molecular dynamics simulations of the S-layer lattice, revealing the importance of bound metal ions. Finally, using electron cryomicroscopy and long-wavelength X-ray diffraction experiments, we mapped the positions of metal ions in the S-layer at near-atomic resolution, supporting our insights from the cellular and simulations data. Our findings contribute to the understanding of how C. crescentus cells form a regularly arranged S-layer on their surface, with implications on fundamental S-layer biology and the synthetic biology of self-assembling biomaterials.
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Nov 2021
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E01-JEM ARM 200CF
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Raj
Pandya
,
Richard Y. S.
Chen
,
Qifei
Gu
,
Jooyoung
Sung
,
Christoph
Schnedermann
,
Oluwafemi S.
Ojambati
,
Rohit
Chikkaraddy
,
Jeffrey
Gorman
,
Gianni
Jacucci
,
Olimpia D.
Onelli
,
Tom
Willhammar
,
Duncan N.
Johnstone
,
Sean M.
Collins
,
Paul A.
Midgley
,
Florian
Auras
,
Tomi
Baikie
,
Rahul
Jayaprakash
,
Fabrice
Mathevet
,
Richard
Soucek
,
Matthew
Du
,
Antonios M.
Alvertis
,
Arjun
Ashoka
,
Silvia
Vignolini
,
David G.
Lidzey
,
Jeremy J.
Baumberg
,
Richard H.
Friend
,
Thierry
Barisien
,
Laurent
Legrand
,
Alex W.
Chin
,
Joel
Yuen-Zhou
,
Semion K.
Saikin
,
Philipp
Kukura
,
Andrew J.
Musser
,
Akshay
Rao
Diamond Proposal Number(s):
[20527]
Open Access
Abstract: Strong-coupling between excitons and confined photonic modes can lead to the formation of new quasi-particles termed exciton-polaritons which can display a range of interesting properties such as super-fluidity, ultrafast transport and Bose-Einstein condensation. Strong-coupling typically occurs when an excitonic material is confided in a dielectric or plasmonic microcavity. Here, we show polaritons can form at room temperature in a range of chemically diverse, organic semiconductor thin films, despite the absence of an external cavity. We find evidence of strong light-matter coupling via angle-dependent peak splittings in the reflectivity spectra of the materials and emission from collective polariton states. We additionally show exciton-polaritons are the primary photoexcitation in these organic materials by directly imaging their ultrafast (5 × 106 m s−1), ultralong (~270 nm) transport. These results open-up new fundamental physics and could enable a new generation of organic optoelectronic and light harvesting devices based on cavity-free exciton-polaritons.
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Nov 2021
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[21323, 20839, 23049]
Open Access
Abstract: The coprecipitation of organic carbon with iron minerals is important for its preservation in soils and sediments, but the mechanisms for carbon-iron interactions and thus the controls on organic carbon cycling are far from understood. Here we coprecipitate carboxylic acids with iron (oxyhydr)oxide ferrihydrite and use near-edge X-ray absorption fine structure spectroscopy and wet chemical treatments to determine the relationship between sequestration mechanism and organic carbon stability against its release and chemical oxidative remineralisation. We show that organic carbon sequestration, stabilisation and persistence increase with an increasing number of carboxyl functional groups. We suggest that carboxyl-richness provides an important control on organic carbon preservation in the natural environment. Our work offers a mechanistic basis for understanding the stability and persistence of organic carbon in soils and sediments, which might be used to develop an overarching relationship between organic functional group-richness, mineral interactions and organic carbon preservation in the Earth system.
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Nov 2021
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Krios I-Titan Krios I at Diamond
Krios II-Titan Krios II at Diamond
Krios IV-Titan Krios IV at Diamond
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Tao
Ni
,
Yanan
Zhu
,
Zhengyi
Yang
,
Chaoyi
Xu
,
Yuriy
Chaban
,
Tanya
Nesterova
,
Jiying
Ning
,
Till
Böcking
,
Michael W.
Parker
,
Christina
Monnie
,
Jinwoo
Ahn
,
Juan R.
Perilla
,
Peijun
Zhang
Diamond Proposal Number(s):
[21004, 20223]
Open Access
Abstract: The viral capsid plays essential roles in HIV replication and is a major platform engaging host factors. To overcome challenges in study native capsid structure, we used the perfringolysin O to perforate the membrane of HIV-1 particles, thus allowing host proteins and small molecules to access the native capsid while improving cryo–electron microscopy image quality. Using cryo–electron tomography and subtomogram averaging, we determined the structures of native capsomers in the presence and absence of inositol hexakisphosphate (IP6) and cyclophilin A and constructed an all-atom model of a complete HIV-1 capsid. Our structures reveal two IP6 binding sites and modes of cyclophilin A interactions. Free energy calculations substantiate the two binding sites at R18 and K25 and further show a prohibitive energy barrier for IP6 to pass through the pentamer. Our results demonstrate that perfringolysin O perforation is a valuable tool for structural analyses of enveloped virus capsids and interactions with host cell factors.
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Nov 2021
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B16-Test Beamline
Optics
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Open Access
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Nov 2021
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[16052]
Abstract: Stingless bees are important pollinators in the tropics. The tremendous variation in body size makes them an excellent group to study how miniaturization affects vision and visual behaviours. Using direct measurements and micro-CT, we reconstructed the eye structure, estimated anatomical spatial resolution and optical sensitivity of the stingless bee Tetragonula iridipennis. T. iridipennis is similar in size to the Australian stingless bee Tetragonula carbonaria and is smaller than honeybees. It has correspondingly small eyes (area = 0.56 mm2), few ommatidia (2451 ± 127), large inter-facet (3.0 ± 0.6°) and acceptance angles (2.8°). Theoretical estimates suggest that T. iridipennis has poorer spatial resolution (0.17 cycles degree−1) than honeybees, bumblebees, and T. carbonaria. Its optical sensitivity (0.08 µm2 sr), though higher than expected, is within the range of diurnal bees. This may provide them with greater contrast sensitivity, which is likely more relevant than the absolute sensitivity in this diurnal bee. Behaviourally determined detection thresholds for single targets using y-maze experiments were 11.5° for targets that provide chromatic contrast alone and 9.1° for targets providing chromatic and achromatic contrast. Further studies into microhabitat preferences and behaviour are required to understand how miniaturization influences its visual ecology.
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Nov 2021
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DIAD-Dual Imaging and Diffraction Beamline
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Christina
Reinhard
,
Michael
Drakopoulos
,
Sharif I.
Ahmed
,
Hans
Deyhle
,
Andrew
James
,
Christopher M.
Charlesworth
,
Martin
Burt
,
John
Sutter
,
Steven
Alexander
,
Peter
Garland
,
Thomas
Yates
,
Russell
Marshall
,
Ben
Kemp
,
Edmund
Warrick
,
Armando
Pueyos
,
Ben
Bradnick
,
Maurizio
Nagni
,
A. Douglas
Winter
,
Jacob
Filik
,
Mark
Basham
,
Nicola
Wadeson
,
Oliver N. F.
King
,
Navid
Aslani
,
Andrew J.
Dent
Open Access
Abstract: The Dual Imaging and Diffraction (DIAD) beamline at Diamond Light Source is a new dual-beam instrument for full-field imaging/tomography and powder diffraction. This instrument provides the user community with the capability to dynamically image 2D and 3D complex structures and perform phase identification and/or strain mapping using micro-diffraction. The aim is to enable in situ and in operando experiments that require spatially correlated results from both techniques, by providing measurements from the same specimen location quasi-simultaneously. Using an unusual optical layout, DIAD has two independent beams originating from one source that operate in the medium energy range (7–38 keV) and are combined at one sample position. Here, either radiography or tomography can be performed using monochromatic or pink beam, with a 1.4 mm × 1.2 mm field of view and a feature resolution of 1.2 µm. Micro-diffraction is possible with a variable beam size between 13 µm × 4 µm and 50 µm × 50 µm. One key functionality of the beamline is image-guided diffraction, a setup in which the micro-diffraction beam can be scanned over the complete area of the imaging field-of-view. This moving beam setup enables the collection of location-specific information about the phase composition and/or strains at any given position within the image/tomography field of view. The dual beam design allows fast switching between imaging and diffraction mode without the need of complicated and time-consuming mode switches. Real-time selection of areas of interest for diffraction measurements as well as the simultaneous collection of both imaging and diffraction data of (irreversible) in situ and in operando experiments are possible.
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Nov 2021
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I24-Microfocus Macromolecular Crystallography
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Diamond Proposal Number(s):
[19800]
Open Access
Abstract: L-Amino acid oxidase (LAAO) is a flavin adenine dinucleotide (FAD)-dependent enzyme active on most proteinogenic L-amino acids, catalysing their conversion to α-keto acids by oxidative deamination of the substrate. For this oxidation reaction, molecular oxygen is used as the electron acceptor, generating hydrogen peroxide. LAAO can be used to detect L-amino acids, for the production of hydrogen peroxide as an oxidative agent or antimicrobial agent, and for the production of enantiopure amino acids from racemates. In this work, we characterised a previously reported LAAO from the bacterium Pseudoalteromonas luteoviolacea. The substrate scope and kinetic properties of the enzyme were determined, and the thermostability was evaluated. Additionally, we elucidated the crystal structure of this bacterial LAAO, enabling us to test the role of active site residues concerning their function in catalysis. The obtained insights and ease of expression of this thermostable LAAO provides a solid basis for the development of engineered LAAO variants tuned for biosensing and/or biocatalysis.
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Nov 2021
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B18-Core EXAFS
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Abstract: Bismuth-based coordination polymers (CPs) have recently attracted attention as catalyst precursors for the electrocatalytic CO2 reduction reaction (eCO2RR). We present a comparative study by investigating six bismuth-based compounds in-depth to elucidate the correlation between their structures and their catalytic CO2-to-formate conversion. Thereby, we identify structural indicators of the pristine CPs resulting in optimized catalytic performance, paving the way for future design of CP derived catalysts. The structural properties of the six pristine materials vary in terms of porosity (from non-porous to 495 m2 g−1), linker type (carboxylate- or phenolate-based), thermal- and chemical stability, and metal content. Herein, electrochemical studies are combined with comprehensive structural investigations using electron microscopy, powder X-ray diffraction, and X-ray absorption spectroscopy. Our study reveals that low chemical stability of the pristine CPs is crucial for the conversion of the precursors into active Bi2O2CO3 and of paramount importance for the eCO2RR activity, while the nature of the pristine material mostly influence the catalyst morphology and transport properties. Of the six investigated CPs, the best performing compounds selectively convert CO2 to formate with faradaic efficiencies in the range 80(3)–95(3)% and current densities of 5(1)–8(1) mA cm−2 at −0.97 VRHE.
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Nov 2021
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