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Abstract: Nanobodies are popular and versatile tools for structural biology. They have a compact single immunoglobulin domain organization, bind target proteins with high affinities while reducing their conformational heterogeneity and stabilize multi-protein complexes. Here we demonstrate that engineered nanobodies can also help overcome two major obstacles that limit the resolution of single-particle cryo-electron microscopy reconstructions: particle size and preferential orientation at the water–air interfaces. We have developed and characterized constructs, termed megabodies, by grafting nanobodies onto selected protein scaffolds to increase their molecular weight while retaining the full antigen-binding specificity and affinity. We show that the megabody design principles are applicable to different scaffold proteins and recognition domains of compatible geometries and are amenable for efficient selection from yeast display libraries. Moreover, we demonstrate that megabodies can be used to obtain three-dimensional reconstructions for membrane proteins that suffer from severe preferential orientation or are otherwise too small to allow accurate particle alignment.

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Abstract: Carbon steel is a universally used material in various transportation and construction industries. Research related to CO2 corrosion environments agrees on the occurrence of siderite (FeCO3) as a main product conforming corrosion films, suggested to impart protection to carbon steel. Identifying and understanding the presence of all corrosion products under certain conditions is of greatest importance to elucidate the behavior of corrosion films under operation conditions (e.g., flow, pH, temperature), but information regarding the nature and formation of other Fe corrosion products apart from FeCO3 is lacking. Corrosion products in CO2 environments typically consist of common Fe minerals that in nature have been demonstrated to undergo transformations, forming other Fe phases. This fact of nature has not been yet explored in the corrosion science field, which can help us to describe mechanisms associated with industrial processes. In this work, we present a multiscale and multidisciplinary approach to understand the mechanisms occurring on corrosion films under the key factors of flow and pH through the combination of molecular techniques with imaging. We report that certainly siderite (FeCO3, cylindrical with trigonal-pyramidal caps) is the main product identified under the conditions used (representative of brine transport at 80 °C), but wustite (FeO) and magnetite (Fe3O4) minerals also form, likely from the de-carbonation of FeCO3 → FeO → Fe3O4, depending on pH under the action of flow. These minerals exist across the corrosion films evidencing a more complex nature of the three-dimensional layer not currently accounted for in the mechanistic models. A relatively low flow velocity (1 m/s), as recognized for industrial operations, is enough to produce chemo-mechanical damage to the FeCO3 crystals, causing breakage at low pH where dissolution of FeCO3 occurs with a rapid crystal size reduction of the cylindrical FeCO3 geometry of ∼80% in just 8 h, changing also the local chemical structure of Fe3C under the film. Similarly, a flow velocity of 1 m/s is capable of inducing crystal removal at neutral pH, promoting further degradation of the steel, compromising the protectiveness assumption of FeCO3 corrosion films. The chemo-mechanical damage and Fe phase transformations will affect the critical localized corrosion, and therefore, they need to be accounted for in mechanistic models aiming to find new avenues for control and mitigation of carbon steel corrosion.

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Abstract: Four Mo-based catalysts were prepared via three different synthesis techniques supported on SiO2 and/or SBA-15. By means of complementary in situ characterization techniques, the carburization process and the final characteristics of these catalysts were investigated. Additionally, the four catalysts were evaluated for the activation of CO2 in the absence and presence of H2 (reverse water–gas shift, RWGS). The results suggest that CO2 reacts via a dissociation on the carbide surface, forming adsorbed oxygen surface species. Severe oxidation of the carbide into its oxidic phases (MoO2 or MoO3) only occurs at temperatures above 850 K in the presence of CO2. O2 dissociates on the carbide surface when introduced at low concentrations (1 vol %) at room temperature, but when exposed to higher concentrations, a strong exothermic bulk re-oxidation reaction occurs, forming MoO2. All four catalysts show high RWGS activity in terms of CO2 conversions with a minimum CO selectivity of 98% without any signs of bulk catalyst oxidation. Although minimal, the observed deactivation is suggested to be primarily due to phase changes between Mo2C allotropes (β-phase, oxycarbide, and η-phase) and/or sintering of the active phase.

Open Access

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Abstract: The reaction-center light-harvesting complex 1 (RC-LH1) is the core photosynthetic component in purple phototrophic bacteria. We present two cryo–electron microscopy structures of RC-LH1 complexes from Rhodopseudomonas palustris. A 2.65-Å resolution structure of the RC-LH114-W complex consists of an open 14-subunit LH1 ring surrounding the RC interrupted by protein-W, whereas the complex without protein-W at 2.80-Å resolution comprises an RC completely encircled by a closed, 16-subunit LH1 ring. Comparison of these structures provides insights into quinone dynamics within RC-LH1 complexes, including a previously unidentified conformational change upon quinone binding at the RC QB site, and the locations of accessory quinone binding sites that aid their delivery to the RC. The structurally unique protein-W prevents LH1 ring closure, creating a channel for accelerated quinone/quinol exchange.

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Abstract: In this article, we report our efforts towards improving in vitro human clearance in a series of 5-azaquinazolines through a series of C4 truncations and C2 expansions. Extensive DMPK studies enabled us to tackle high Aldehyde Oxidase (AO) metabolism and unexpected discrepancies in human hepatocyte and liver microsomal intrinsic clearance. Our efforts culminated with the discovery of 5-azaquinazoline 35, which also displayed exquisite selectivity for IRAK4, and showed synergistic in vitro activity against MyD88/CD79 double mutant ABC-DLBCL in combination with the covalent BTK inhibitor acalabrutinib.