B18-Core EXAFS
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Diamond Proposal Number(s):
[21713]
Open Access
Abstract: The development of new strategies for spatially controllable immobilization has encouraged the preparation of novel catalysts based on the organic-inorganic hybrid concept. In the present paper, a Cu-based multi-structured silica catalyst has been prepared and fully characterized. The inclusion of Cu(II) in β-cyclodextrins has been exploited with the double aim to stabilize the metal and to act as a source of Cu(I) catalytic sites. Multi-technique characterization by infrared, UV-visible, electron microscopy and X-ray absorption spectroscopies of the fresh and exhaust catalysts provided information on the local structure, redox properties and stability of the investigated hybrid systems. The catalytic system showed that copper nanospecies were dispersed on the support and hardly affected by the catalytic tests, confirming the stabilizing effect of β-CD, and likely of the N1-(3-Trimethoxysilylpropyl) diethylenetriamine spacer, as deduced by X-ray absorption spectroscopy analysis. Overall, we demonstrate a feasible approach to efficiently anchor Cu(II) species and to obtain a reusable single-site hybrid catalyst well suited for Cu(I)-catalyzed alkyne-azide cycloaddition.
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Oct 2020
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Vasily S.
Stolyarov
,
Kirill S.
Pervakov
,
Anna S.
Astrakhantseva
,
Igor A.
Golovchanskiy
,
Denis V.
Vyalikh
,
Timur K.
Kim
,
Sergey V.
Eremeev
,
Vladimir A.
Vlasenko
,
Vladimir M.
Pudalov
,
Alexander A.
Golubov
,
Eugene V.
Chulkov
,
Dimitri
Roditchev
Abstract: In pnictide RbEuFe4As4, superconductivity sets in at 36 K and coexists, below 15–19 K, with the long-range magnetic ordering of Eu 4f spins. Here we report scanning tunneling experiments performed on cold-cleaved single crystals of the compound. The data revealed the coexistence of large Rb-terminated and small Eu-terminated terraces, both manifesting 1 × 2 and 2‾√×2‾√
2
×
2
reconstructions. On 2‾√×2‾√
2
×
2
surfaces, a hidden electronic order with a period ∼5 nm was discovered. A superconducting gap of ∼7 meV was seen to be strongly filled with quasiparticle states. The tunneling spectra compared with density functional theory calculations confirmed that flat electronic bands due to Eu 4f orbitals are situated ∼1.8 eV below the Fermi level and thus do not contribute directly to Cooper pair formation.
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Oct 2020
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I03-Macromolecular Crystallography
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Kuan-ying A.
Huang
,
Daming
Zhou
,
Elizabeth E.
Fry
,
Abhay
Kotecha
,
Peng-nien
Huang
,
Shu-li
Yang
,
Kuo-chien
Tsao
,
Yhu-chering
Huang
,
Tzou-yien
Lin
,
Jingshan
Ren
,
David I.
Stuart
Diamond Proposal Number(s):
[10627]
Open Access
Abstract: Enterovirus 71 (EV71)-neutralizing antibodies correlate with protection and have potential as therapeutic agents. We isolate and characterize a panel of plasmablast-derived monoclonal antibodies from an infected child whose antibody response focuses on the plateau epitope near the icosahedral 3-fold axes. Eight of a total of 19 antibodies target this epitope and three of these potently neutralize the virus. Representative neutralizing antibodies 38-1-10A and 38-3-11A both confer effective protection against lethal EV71 challenge in hSCARB2-transgenic mice. The cryo-electron microscopy structures of the EV71 virion in complex with Fab fragments of these potent and protective antibodies reveal the details of a conserved epitope formed by residues in the BC and HI loops of VP2 and the BC and HI loops of VP3 spanning the region around the 3-fold axis. Remarkably, the two antibodies interact with the epitope in quite distinct ways. These plateau-binding antibodies provide templates for promising candidate therapeutics.
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Oct 2020
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B18-Core EXAFS
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Diamond Proposal Number(s):
[15151, 18431]
Open Access
Abstract: The technique of inelastic neutron scattering (INS) is used to investigate how hydrogen is partitioned within a series of Na and S promoted iron-based Fischer-Tropsch-to-olefin catalysts. Two reaction test regimes are examined. First, reaction testing at elevated temperature and pressure demonstrate how Na/S additions enhance short chain olefin selectivity and reduce methane formation under industrially relevant reaction conditions. For a fixed level of Na incorporation (2000 ppm), sulfur concentrations of ≤ 100 ppm result in only a modest improvement in olefin selectivity. However, for sulfur values of ≥ 100 ppm there is a noticeable and systematic increase in C2-C4 olefin selectivity; rising from ∼30.0 % to 35.2% at 250 ppm. Second, using ambient pressure CO hydrogenation as a test reaction in INS and micro-reactor configurations, catalyst samples are further analysed by TPR, TPO, XRD and S K-edge XANES. INS shows the formation of a hydrocarbonaceous overlayer to be significantly attenuated by the presence of the promoters, with increasing S levels significantly reducing the intensity of the sp2 and sp3 hybridised ν(C-H) modes of the overlayer, albeit to differing degrees. A probable role for how this combination of promoters is perturbing the form of the hydrocarbonaceous overlayer to subsequently moderate the product distribution is considered.
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Oct 2020
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I15-1-X-ray Pair Distribution Function (XPDF)
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Diamond Proposal Number(s):
[21467, 22209]
Open Access
Abstract: Tetrel (Tt = Si, Ge, and Sn) clathrates have highly tunable host–guest structures and have been investigated as novel electrode materials for Li-ion batteries. However, there is little understanding of how the clathrate structure affects the lithiation processes and phase evolution. Herein, the electrochemical lithiation pathway of type I clathrate Ba8Ge43 is investigated with synchrotron X-ray diffraction (XRD) and pair distribution function (PDF) analyses and compared to the lithiation of germanium with a diamond cubic structure (α-Ge). The results confirm previous laboratory XRD studies showing that Ba8Ge43 goes through a solely amorphous phase transformation, which contrasts with the crystalline phase transformations that take place during lithiation of micrometer-sized α-Ge particles. The local structure of framework-substituted clathrate Ba8Al16Ge30 after lithiation is found to proceed through an amorphous phase transformation similar to that in Ba8Ge43. In situ PDF and XRD during heating show that the amorphous phases derived from lithiation of Ba8Ge43 are structurally related to various Li–Ge phases and crystallize at low temperatures (350–420 K). We conclude that the Ba atoms inside the clathrate structure act to break up the long-range ordering of Li–Ge clusters and kinetically prevent the nucleation and growth of bulk crystalline phases. The amorphous phase evolution of the clathrate structure during lithiation results in electrochemical properties distinct from those in α-Ge, such as a single-phase reaction mechanism and lower voltage, suggesting possible advantages of clathrates over elemental phases for use as anodes in Li-ion batteries.
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Oct 2020
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I11-High Resolution Powder Diffraction
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Diamond Proposal Number(s):
[18786]
Abstract: Solid solutions between the known compounds Ca2FeO3CuCh and Sr2FeO3CuCh (Ch = S, Se) in which there are two fairly similar sites (8 and 9 coordinate) for the alkaline earth cations are not attainable under standard high temperature solid state syntheses under thermodynamic control. Instead compounds with greater condensation of FeO5 square pyramids form as these afford one 8-coordinate site and one 12-coordinate site for the alkaline earths which is better suited to the size-mismatched cations in the compounds Sr3-xCaxFe2O5Cu2Ch2 (Ch = S, Se; x = 1, 2). Sr2CaFe2O5Cu2S2, SrCa2Fe2O5Cu2S2, Sr2CaFe2O5Cu2Se2 and SrCa2Fe2O5Cu2Se2 all crystallise in the tetragonal space group I4/mmm with two formula units in the unit cell with the crystal structure first described for Sr3Fe2O5Cu2S2. Oxide slabs composed of vertex-sharing FeO5 square pyramids are separated by Cu2Ch2 anti-fluorite-type layers. The larger Sr2+ ions have a strong preference for the 12-coordinate site in the oxide slabs, while Ca2+ cations dominate the 8-coordinate sites separating the oxide and chalcogenide slabs. Powder neutron diffraction reveals that all the compounds display antiferromagnetic long range ordering of the Fe3+ moments with ordering temperatures well above room temperature and exceeding 526 K in the case of Ca2SrFe2O5Cu2Se2.
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Oct 2020
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Chuang
Liu
,
Luiza
Mendonca
,
Yang
Yang
,
Yuanzhu
Gao
,
Chenguang
Shen
,
Jiwei
Liu
,
Tao
Ni
,
Bin
Ju
,
Congcong
Liu
,
Xian
Tang
,
Jinli
Wei
,
Xiaomin
Ma
,
Yanan
Zhu
,
Weilong
Liu
,
Shuman
Xu
,
Yingxia
Liu
,
Jing
Yuan
,
Jing
Wu
,
Zheng
Liu
,
Zheng
Zhang
,
Lei
Li
,
Peiyi
Wang
,
Peijun
Zhang
Open Access
Abstract: The ongoing global pandemic of coronavirus disease 2019 (COVID-19) resulted from the outbreak of SARS-CoV-2 in December 2019. Currently, multiple efforts are being made to rapidly develop vaccines and treatments to fight COVID-19. Current vaccine candidates use inactivated SARS-CoV-2 viruses; therefore, it is important to understand the architecture of inactivated SARS-CoV-2. We have genetically and structurally characterized β-propiolactone-inactivated viruses from a propagated and purified clinical strain of SARS-CoV-2. We observed that the virus particles are roughly spherical or moderately pleiomorphic. Although a small fraction of prefusion spikes are found, most spikes appear nail shaped, thus resembling a postfusion state, where the S1 protein of the spike has disassociated from S2. Cryoelectron tomography and subtomogram averaging of these spikes yielded a density map that closely matches the overall structure of the SARS-CoV postfusion spike and its corresponding glycosylation site. Our findings have major implications for SARS-CoV-2 vaccine design, especially those using inactivated viruses.
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Oct 2020
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I02-Macromolecular Crystallography
I03-Macromolecular Crystallography
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Sander
Herfst
,
Jie
Zhang
,
Mathilde
Richard
,
Ryan
Mcbride
,
Pascal
Lexmond
,
Theo M.
Bestebroer
,
Monique I. J.
Spronken
,
Dennis
De Meulder
,
Judith M.
Van Den Brand
,
Miruna E.
Rosu
,
Stephen R.
Martin
,
Steven J.
Gamblin
,
Xiaoli
Xiong
,
Wenjie
Peng
,
Rogier
Bodewes
,
Erhard
Van Der Vries
,
Albert D. M. E.
Osterhaus
,
James C.
Paulson
,
John J.
Skehel
,
Ron A. M.
Fouchier
Diamond Proposal Number(s):
[9826, 13775]
Abstract: In 2014, an outbreak of avian A/H10N7 influenza virus occurred among seals along North-European coastal waters, significantly impacting seal populations. Here, we examine the cross-species transmission and mammalian adaptation of this influenza A virus, revealing changes in the hemagglutinin surface protein that increase stability and receptor binding. The seal A/H10N7 virus was aerosol or respiratory droplet transmissible between ferrets. Compared with avian H10 hemagglutinin, seal H10 hemagglutinin showed stronger binding to the human-type sialic acid receptor, with preferential binding to α2,6-linked sialic acids on long extended branches. In X-ray structures, changes in the 220-loop of the receptor-binding pocket caused similar interactions with human receptor as seen for pandemic strains. Two substitutions made seal H10 hemagglutinin more stable than avian H10 hemagglutinin and similar to human hemagglutinin. Consequently, identification of avian-origin influenza viruses across mammals appears critical to detect influenza A viruses posing a major threat to humans and other mammals.
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Oct 2020
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B21-High Throughput SAXS
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Diamond Proposal Number(s):
[17118]
Abstract: A dipeptide-based synthetic amphiphile bearing a myristyl chain has been found to form hydrogels in the pH range 6.9–8.5 and organogels in various organic solvents including petroleum ether, diesel, kerosene, and petrol. These organogels and hydrogels have been thoroughly studied and characterized by different techniques including high-resolution transmission electron microscopy, X-ray diffraction, Fourier-transform infrared spectroscopy, and rheology. It has been found that the xerogel obtained from the peptide gelator can trap various toxic organic dyes from wastewater efficiently. Moreover, the hydrogel has been used to remove toxic heavy metal ions Pb2+ and Cd2+ from wastewater. Dye adsorption kinetics has been studied, and it has been fitted by using the Freundlich isotherm equation. Interestingly, the gelator amphiphilic peptide gels fuel oil, kerosene, diesel, and petrol in a biphasic mixture of salt water and oil within a few seconds. This indicates that these gels not only may find application in oil spill recovery but also can be used to remove toxic organic dyes and hazardous toxic metal ions from wastewater. Moreover, the gelator can be recycled several times without significant loss of activity, suggesting the sustainability of this new gelator. This holds future promise for environmental remediation by using peptide-based gelators.
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Oct 2020
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I12-JEEP: Joint Engineering, Environmental and Processing
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Diamond Proposal Number(s):
[16096]
Abstract: Thermal shocks are an important incident in operation of a pressure vessel which can have a significant impact on the structural integrity of the vessel. Often experiments that consider the state of the vessel before and after the thermal shock are used to evaluate the effects of the thermal shock. The studies can be complemented by time-resolved numerical simulations, which may be validated against the final state of the vessel obtained experimentally, to infer the transient response of the material. The transient response is important as the material experiences the highest level of stress in a short period which can induce catastrophic failure. This paper reports time-resolved experimental quantification of strain in reactor pressure vessel material during thermal shock measured by in-situ synchrotron diffraction. Specimens were extracted from a plate of nuclear pressure vessel steel with a nickel alloy cladding deposited by overlay welding. The specimens, with and without cracks, were subjected to thermal loading by heating then rapidly quenching the cladding in cold water. Strains were measured during thermal loading at a point near the crack tip from which the stress state around the crack tip was calculated and compared with a transient finite element model of the experiment. It was found that the peak near-tip stress occurred within the first second after the onset of rapid cooling. It was demonstrated from experimental measurements that the peak stress intensity factor occurred during thermal shock, rather than under steady conditions before or after the thermal shock. It was shown that although the finite element simulation predicts the steady state condition of the material after thermal shock, its transient response dependents significantly on a number of inputs with high uncertainty, making its time-resolved results unreliable for high-fidelity integrity assessments.
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Oct 2020
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