B21-High Throughput SAXS
I04-Macromolecular Crystallography
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Diamond Proposal Number(s):
[14980, 19844]
Abstract: Ubiquitin-specific protease 1 (USP1) acts together with the cofactor UAF1 during DNA repair processes to specifically remove monoubiquitin signals. One substrate of the USP1−UAF1 complex is the monoubiquitinated FANCI−FANCD2 heterodimer, which is involved in the repair of DNA interstrand crosslinks via the Fanconi anemia pathway. Here we determine structures of human USP1−UAF1 with and without ubiquitin and bound to monoubiquitinated FANCI−FANCD2. The crystal structures of USP1−UAF1 reveal plasticity in USP1 and key differences to USP12−UAF1 and USP46−UAF1, two related proteases. A cryo-EM reconstruction of USP1−UAF1 in complex with monoubiquitinated FANCI−FANCD2 highlights a highly orchestrated deubiquitination process, with USP1−UAF1 driving conformational changes in the substrate. An extensive interface between UAF1 and FANCI, confirmed by mutagenesis and biochemical assays, provides a molecular explanation for the requirement of both proteins, despite neither being directly involved in catalysis. Overall, our data provide molecular details of USP1−UAF1 regulation and substrate recognition.
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Apr 2021
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I12-JEEP: Joint Engineering, Environmental and Processing
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Diamond Proposal Number(s):
[19216]
Abstract: High-speed synchrotron tomography was used to investigate the nucleation and growth dynamics of Al13Fe4 intermetallic during solidification of an Al-5wt%Fe alloy, providing new insights into its formation process. The majority of Al13Fe4 intermetallics nucleated near the surface oxide of the specimen and a few nucleated at Al13Fe4 phase. Al13Fe4 crystals grew into a variety of shapes, including plate-like, hexagonal tabular, stair-like and V-shaped, which can be attributed to the crystal structure of this compound and its susceptibility to twinning. Hole-like defects filled with aluminium melt were observed within the intermetallics. Oriented particle attachment mechanism was proposed to explain the formation of the Al13Fe4 intermetallic, which needs further experiments and simulation to confirm.
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Apr 2021
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I13-2-Diamond Manchester Imaging
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G. R.
Parker
,
D. S.
Eastwood
,
M.
Storm
,
K.
Vitharana
,
E. M.
Heatwole
,
I.
Lopez-Pulliam
,
R. M.
Broilo
,
P. M.
Dickson
,
A.
Martinez
,
Christoph
Rau
,
N. K.
Bourne
Diamond Proposal Number(s):
[15068, 16650, 18198]
Abstract: High-resolution synchrotron x-ray radiography with computed tomography is used to observe the evolution of porosity created by thermal exposure in two HMX-based polymer-bonded explosive compositions; LX-04 and BX-63. The measurements were made in situ, over an extended period of time, during which the samples were heated on a slow-rate thermal trajectory. The tests ended with thermal-runaway to ignition after which the samples were consumed by combustion. The primary means of damage appears to be from mechanical debonding of the HMX-binder interface with secondary contribution from chemical decomposition. Confinement and binder properties affect the amount of porosity and permeability that develops. Additionally, observations were made describing the emergence and structure of an internal ignition volume, the formation and transport of a pre-ignition melt layer, and how the early stages of combustion were affected by material morphology, mechanical confinement and melt. The contact angle between molten HMX and the fluoropolymer, Viton A, is also presented. For the first time we have time-resolved x-ray images of ignition in sufficient detail to verify the mechanism of cookoff in polymer-bonded explosive compositions.
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Apr 2021
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[22198]
Abstract: Solid state batteries have attracted extensive attention, but the lithium penetration through the solid electrolyte remains a critical barrier to commercialisation and is not yet fully understood. In this study, the 3D morphological evolution of cracks with deposited lithium were tracked as they penetrated through the solid electrolyte during repetitive plating. This is achieved by utilising in-situ synchrotron X-ray computed tomography with high spatial and temporal resolutions. Thin-sheet cracks were observed to penetrate the solid electrolyte without immediate short-circuiting of the cell. Changes in their width and volume were quantified. By calculating the volume of deposited lithium, it was found that the lithium was only partially filled in cracks, and its filling ratio quickly dropped from 94.95% after the 1st plating to ca. 20% after the 4th plating. The filling process was revealed through tracking the line profile of grayscale along cracks. It was found that lithium grew much more slowly than cracks, so that the cracks near the cathode side were largely hollow and the cell could continue to operate. The deposited lithium after short circuit was segmented and its distribution was visualised. DVC analysis was applied to map local high stress and strain, which aggregated along cracks and significantly increased at areas where new cracks formed.
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Apr 2021
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B07-C-Versatile Soft X-ray beamline: Ambient Pressure XPS and NEXAFS
B18-Core EXAFS
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Diamond Proposal Number(s):
[26554]
Open Access
Abstract: The nature and evolution of FeNxCy moieties in Fe/C/N catalysts has been studied by analysing Fe and N environments. TEM and Fe-XAS reveal the presence of FeNx moieties and Fe3C particles in the fresh catalyst. NEXAFS reveals the presence of two groups of (Fe)NxCy ensembles, namely (Fe)Nx-pyridinic and (Fe)Nx-pyrrolic. The architecture of the FeNxCy ensembles and their evolution during the ORR has been analysed by XAS, NEXAFS, and identical locations TEM. NxCy, FeNxCy and Fe3C species are partially removed during the ORR, resulting in the formation of Fe2O3 and Fe3O4 particles with different morphologies. The process is more severe in acid electrolyte than in alkaline one. (Fe)Nx-pyrrolic moieties are the main ones in the fresh catalysts, but (Fe)Nx-pyridinic groups are more stable after the ORR. The correlation between the evolution of the ORR activity and that of the FeNxCy ensembles indicates that FeNx-pyridinic ensembles are responsible for the ORR activity.
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Apr 2021
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Karel
Saksl
,
Ildikó
Pethes
,
Pál
Jóvári
,
Zuzana
Molčanová
,
Juraj
Durisin
,
Beáta
Ballóková
,
László
Temleitner
,
Stefan
Michalik
,
Michaela
Sulikova
,
Katarína
Šuľová
,
Miloš
Fejercak
,
Dagmara
Varcholová
,
Rastislav
Motýľ
Abstract: Amorphous alloys consisting of elements present in the human body, such as magnesium, zinc and calcium, are currently extensively studied in order to utilize them as a material for biodegradable orthopaedic implants. amongst all Mg-Zn-Ca alloys investigated up to date, the Mg66Zn30Ca4 composition has the greatest potential for applications. Its critical casting thickness reaches a value of 5 mm, the compressive strength (716–854 MPa) is about 4 times the limit of human cortical bone while elastic modulus is (31 GPa) is only 3 times higher than that of human bone. During dissolution the alloy shows only marginal hydrogen evolution. Here we present a detailed, experiment-based structural investigation of Mg66Zn30Ca4. Structural and topological analysis of its atomic structure reveals a high number of predominantly icosahedral densely packed Zn-centred clusters. It is believed that the existence of these structural units is responsible for the suppression of internal diffusion and thus greatly improves glass formability.
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Apr 2021
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I12-JEEP: Joint Engineering, Environmental and Processing
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Yunhui
Chen
,
Samuel J.
Clark
,
David M.
Collins
,
Sebastian
Marussi
,
Simon A.
Hunt
,
Danielle
Fenech
,
Thomas
Connolley
,
Robert C.
Atwood
,
Oxana V.
Magdysyuk
,
Gavin J.
Baxter
,
Martyn A.
Jones
,
Chu Lun Alex
Leung
,
Peter D.
Lee
Diamond Proposal Number(s):
[20096]
Abstract: The governing mechanistic behaviour of Directed Energy Deposition Additive Manufacturing (DED-AM) is revealed by a combined in situ and operando synchrotron X-ray imaging and diffraction study of a nickel-base superalloy, IN718. Using a unique DAE-AM process replicator, real-space imaging enables quantification of the melt-pool boundary and flow dynamics during solidification. This imaging knowledge was also used to informed precise diffraction measurements of temporally resolved microstructural phases during transformation and stress development with a spatial resolution of 100 µm. The diffraction quantified thermal gradient enabled a dendritic solidification microstructure to be predicted and coupled to the stress orientation and magnitude. The fast cooling rate entirely suppressed the formation of secondary phases or recrystallisation in the solid-state. Upon solidification, the stresses rapidly increase to the yield strength during cooling. This insight, combined with the large solidification range of IN718 suggests that the accumulated plasticity exhausts the ductility of the alloy, causing liquation cracking. This study has revealed additional fundamental mechanisms governing the formation of highly non-equilibrium microstructures during DED-AM.
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Mar 2021
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Abstract: Catalytic hydrodeoxygenation (HDO) provides a promising route for upgrading biomass-derived fatty acids to alkanes, which are potential biofuels (e.g. jet fuel (C8–C16) and diesel (C12–C22)) that could reduce our reliance on unsustainable fossil fuels. Currently, catalytic HDO, conducted over catalysts such as molybdenum disulfide, necessitates harsh operating conditions (>300 °C) which is both environmentally and economically unsustainable and promotes unwanted side reactions, e.g. cracking, which compromises product selectivity. Accordingly, the development of novel catalysts, which enable efficient and sustainable HDO, under milder operating conditions, and their translation from lab bench to large-scale production are highly desired. This review discusses the recent development of heterogeneous catalysts for HDO (including reaction pathways, mechanisms, and side reactions) and explores design strategies for the development of new multifunctional catalysts with potential to enable future development of HDO processes under mild conditions. In particular, we consider the sequential cascade transformation of fatty acids into fatty alcohols (via hydrodeoxygenation) and then hydrocarbons (via dehydration and hydrogenation), which requires the coupling of different but complementary catalytic sites, as an attractive alternative mild HDO strategy.
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Mar 2021
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I03-Macromolecular Crystallography
I04-Macromolecular Crystallography
I24-Microfocus Macromolecular Crystallography
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Sergio
Celis
,
Fruzsina
Hobor
,
Thomas
James
,
Gail J.
Bartlett
,
Amaurys A.
Ibarra
,
Deborah K.
Shoemark
,
Zsofia
Hegedus
,
Kristina
Hetherington
,
Derek N.
Woolfson
,
Richard B.
Sessions
,
Thomas A.
Edwards
,
David M.
Andrews
,
Adam
Nelson
,
Andrew J.
Wilson
Diamond Proposal Number(s):
[19248]
Open Access
Abstract: Protein–protein interactions (PPIs) are central to biological mechanisms, and can serve as compelling targets for drug discovery. Yet, the discovery of small molecule inhibitors of PPIs remains challenging given the large and typically shallow topography of the interacting protein surfaces. Here, we describe a general approach to the discovery of orthosteric PPI inhibitors that mimic specific secondary protein structures. Initially, hot residues at protein–protein interfaces are identified in silico or from experimental data, and incorporated into secondary structure-based queries. Virtual libraries of small molecules are then shape-matched against the queries, and promising ligands docked to target proteins. The approach is exemplified experimentally using two unrelated PPIs that are mediated by an α-helix (p53/hDM2) and a β-strand (GKAP/SHANK1-PDZ). In each case, selective PPI inhibitors are discovered with low μM activity as determined by a combination of fluorescence anisotropy and 1H–15N HSQC experiments. In addition, hit expansion yields a series of PPI inhibitors with defined structure–activity relationships. It is envisaged that the generality of the approach will enable discovery of inhibitors of a wide range of unrelated secondary structure-mediated PPIs.
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Mar 2021
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B18-Core EXAFS
I11-High Resolution Powder Diffraction
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Pu
Zhao
,
Lin
Ye
,
Guangchao
Li
,
Chen
Huang
,
Simson
Wu
,
Ping-Luen
Ho
,
Haokun
Wang
,
Tatchamapan
Yoskamtorn
,
Denis
Sheptyakov
,
Giannantonio
Cibin
,
Angus I.
Kirkland
,
Chiu C.
Tang
,
Anmin
Zheng
,
Wenjuan
Xue
,
Donghai
Mei
,
Kongkiat
Suriye
,
Shik Chi Edman
Tsang
Abstract: Synthesizing atomically dispersed synergistic active pairs is crucial yet challenging in developing highly active heterogeneous catalysts for various industrially important reactions. Here, a single molecular Re species is immobilized on the inner surface of a Y zeolite with Brønsted acid sites (BASs) within atomic proximity to form Re OMS–BAS active pairs for the efficient catalysis of olefin metathesis reactions (OMS: olefin metathesis site). The synergy within the active pairs is revealed by studying the coadsorption geometry of the olefin substrates over the active pairs by synchrotron X-ray and neutron powder diffraction. It is shown that the BAS not only facilitates olefin adsorption but also aligns the olefin molecule to the Re OMS for efficient intermediate formation. Consequently, for the cross-metathesis of ethene and trans-2-butene to propene, this catalyst shows high activity under mild reaction conditions without observable deactivation. The catalyst outperforms not only traditional ReOx-based catalysts but also the best industrially applicable WOx-based catalyst thus far that we discovered previously. The concept of using two isolated active sites of different functionalities within atomic proximity in a confined cavity can provide opportunities for designing synergistically catalytic materials.
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Mar 2021
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