B22-Multimode InfraRed imaging And Microspectroscopy
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I.
Silverwood
,
N.
Al-rifai
,
E.
Cao
,
D.
Nelson
,
A.
Chutia
,
P.
Wells
,
S. P.
Nolan
,
M. D.
Frogley
,
G.
Cinque
,
A.
Gavriilidis
,
C. R. A.
Catlow
Diamond Proposal Number(s):
[8962]
Abstract: Anodically bonded etched siliconmicrofluidic devices that allow infrared spectroscopic measurement of solutions are reported. These extend spatially well-resolved in situ infrared measurement to higher temperatures and pressures than previously reported, making them useful for effectively time-resolved measurement of realistic catalytic processes. A data processing technique necessary for the mitigation of interference fringes caused by multiple reflections of the probe beam is also described.
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Feb 2016
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B22-Multimode InfraRed imaging And Microspectroscopy
I11-High Resolution Powder Diffraction
I19-Small Molecule Single Crystal Diffraction
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Cristina
Perez Krap
,
Ruth
Newby
,
Amarajothi
Dhakshinamoorthy
,
Hermenegildo
García
,
Izabela
Cebula
,
Timothy
Easun
,
Mathew
Savage
,
Jennifer E.
Eyley
,
Shian
Gao
,
Alexander J.
Blake
,
William
Lewis
,
Peter H.
Beton
,
Mark
Warren
,
David R.
Allan
,
Mark D.
Frogley
,
Chiu C.
Tang
,
Gianfelice
Cinque
,
Sihai
Yang
,
Martin
Schroeder
Diamond Proposal Number(s):
[8618, 8943, 7548, 8448, 8937, 11279]
Abstract: Metal−organic frameworks (MOFs) are usually
synthesized using a single type of metal ion, and MOFs
containing mixtures of different metal ions are of great interest
and represent a methodology to enhance and tune materials
properties. We report the synthesis of [Ga2(OH)2(L)] (H4L =
biphenyl-3,3′,5,5′-tetracarboxylic acid), designated as MFM-
300(Ga2), (MFM = Manchester Framework Material replacing
NOTT designation), by solvothermal reaction of Ga(NO3)3 and
H4L in a mixture of DMF, THF, and water containing HCl for 3
days. MFM-300(Ga2) crystallizes in the tetragonal space group
I4122, a = b = 15.0174(7) Å and c = 11.9111(11) Å and is isostructural with the Al(III) analogue MFM-300(Al2) with pores decorated
with −OH groups bridging Ga(III) centers. The isostructural Fe-doped material [Ga1.87Fe0.13(OH)2(L)], MFM-300(Ga1.87Fe0.13), can
be prepared under similar conditions to MFM-300(Ga2) via reaction of a homogeneous mixture of Fe(NO3)3 and Ga(NO3)3 with
biphenyl-3,3′,5,5′-tetracarboxylic acid. An Fe(III)-based material [Fe3O1.5(OH)(HL)(L)0.5(H2O)3.5], MFM-310(Fe), was synthesized
with Fe(NO3)3 and the same ligand via hydrothermal methods. [MFM-310(Fe)] crystallizes in the orthorhombic space group Pmn21
with a = 10.560(4) Å, b = 19.451(8) Å, and c = 11.773(5) Å and incorporates μ3-oxo-centered trinuclear iron cluster nodes connected
by ligands to give a 3D nonporous framework that has a different structure to the MFM-300 series. Thus, Fe-doping can be used to
monitor the effects of the heteroatom center within a parent Ga(III) framework without the requirement of synthesizing the
isostructural Fe(III) analogue [Fe2(OH)2(L)], MFM-300(Fe2), which we have thus far been unable to prepare. Fe-doping of MFM-
300(Ga2) affords positive effects on gas adsorption capacities, particularly for CO2 adsorption, whereby MFM-300(Ga1.87Fe0.13) shows
a 49% enhancement of CO2 adsorption capacity in comparison to the homometallic parent material. We thus report herein the highest
CO2 uptake (2.86 mmol g−1 at 273 K at 1 bar) for a Ga-based MOF. The single-crystal X-ray structures of MFM-300(Ga2)-solv,
MFM-300(Ga2), MFM-300(Ga2)·2.35CO2, MFM-300(Ga1.87Fe0.13)-solv, MFM-300(Ga1.87Fe0.13), and MFM-300(Ga1.87Fe0.13)·
2.0CO2 have been determined. Most notably, in situ single-crystal diffraction studies of gas-loaded materials have revealed that
Fe-doping has a significant impact on the molecular details for CO2 binding in the pore, with the bridging M−OH hydroxyl groups
being preferred binding sites for CO2 within these framework materials. In situ synchrotron IR spectroscopic measurements on CO2
binding with respect to the −OH groups in the pore are consistent with the above structural analyses. In addition, we found that,
compared to MFM-300(Ga2), Fe-doped MFM-300(Ga1.87Fe0.13) shows improved catalytic properties for the ring-opening reaction of
styrene oxide, but similar activity for the room-temperature acetylation of benzaldehyde by methanol. The role of Fe-doping in these
systems is discussed as a mechanism for enhancing porosity and the structural integrity of the parent material.
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Jan 2016
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B22-Multimode InfraRed imaging And Microspectroscopy
Optics
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Diamond Proposal Number(s):
[8960, 10407]
Open Access
Abstract: In this paper, we experimentally demonstrate the use of infrared synchrotron radiation (IR-SR) as a broadband source for photothermal near-field infrared spectroscopy. We assess two methods of signal transduction; cantilever resonant thermal expansion and scanning thermal microscopy. By means of rapid mechanical chopping (50-150 kHz), we modulate the IR-SR at rates matching the contact resonance frequencies of atomic force microscope (AFM) cantilevers, allowing us to record interferograms yielding Fourier transform infrared (FT-IR) photothermal absorption spectra of polystyrene and cyanoacrylate films. Complementary offline measurements using a mechanically chopped CW IR laser confirmed that the resonant thermal expansion IR-SR measurements were below the diffraction limit, with a spatial resolution better than 500 nm achieved at a wavelength of 6 μm, i.e. λ/12 for the samples studied. Despite achieving the highest signal to noise so far for a scanning thermal microscopy measurement under conditions approaching near-field (dictated by thermal diffusion), the IR-SR resonant photothermal expansion FT-IR spectra measured were significantly higher in signal to noise in comparison with the scanning thermal data.
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Jan 2016
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B22-Multimode InfraRed imaging And Microspectroscopy
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Diamond Proposal Number(s):
[10065]
Abstract: Studies of drug-cell interactions in cancer model systems are essential in the preclinical stage of rational drug design, which relies on a thorough understanding of the mechanisms underlying cytotoxic activiy and biological effects, at a molecular level. This study aimed at applying complementary vibrational spectroscopy methods to evaluate the cellular impact of two Pt(II) and Pd(II) dinuclear chelates with spermine (Pt2Spm and Pd2Spm), using cisplatin (cis-Pt(NH3)2Cl2) as a reference compound. Their effects on cellular metabolism were monitored in a human triple-negative metastatic breast cancer cell line (MDA-MB-231) by Raman and synchrotron-radiation infrared microspectroscopies, for different drug concentrations (2-8 μM) at 48 h exposure. Multivariate data analysis was applied (unsupervised PCA), unveiling drug- and concentration-dependent effects: apart from discrimination between control and drug-treated cells, a clear separation was obtained for the different agents studied – mononuclear vs polynuclear, and Pt(II) vs Pd(II). Spectral biomarkers of drug action were identified, as well as the cellular response to the chemotherapeutic insult. The main effect of the tested compounds was found to be on DNA, lipids and proteins, the Pd(II) agent having a more significant impact on proteins while its Pt(II) homologue affected the cellular lipid content at lower concentrations, which suggests the occurrence of distinct and unconventional pathways of cytotoxicity for these dinuclear polyamine complexes. Raman and FTIR microspectroscopies were confirmed as powerful non-invasive techniques to obtain unique spectral signatures of biochemical impact and physiological reaction of cells to anticancer agents.
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Jan 2016
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B22-Multimode InfraRed imaging And Microspectroscopy
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Diamond Proposal Number(s):
[10400]
Abstract: Micro-Infrared Spectroscopy (μSR-FTIR) and X-ray diffraction (μSR-XRD) with synchrotron light, Gas Chromatography/Mass Spectrometry (CG/MS), Optical Microscopy (OM) and Scanning Electron Microscopy (SEM/EDS) were used to identify and obtain the distribution of complex mixtures of calcium salts of low molecular weight organic acids (LMWOA) in micro-layered micro-samples. Filamentous fungi produce LMWOA that can react with metal cations producing stable salts. These substances were found in the dark spots covering the surfaces of Saint Michael's Chapel wall paintings of the Royal Monastery of Pedralbes in Barcelona linking them to old fungi activity. The presence of glycerol likewise related to the fungi activity is also identified in the layers.
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Jan 2016
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B22-Multimode InfraRed imaging And Microspectroscopy
Theoretical Physics
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Diamond Proposal Number(s):
[12221]
Abstract: A major topic in InfraRed (IR) spectroscopic studies of living cells is the complexity of the vibrational spectra, involving hundreds of overlapping absorption bands from all the cellular components present at detectable concentrations. We focus on to the relative contribution of both small-molecule metabolites and macromolecules, while defining the spectroscopic properties of cells and tissue in the middle IR (midIR) region. As a consequence, we show the limitations of current interpretative schemes that rely on a small number of macromolecules for IR band assignment. The discussion is framed specifically around the glycolytic metabolism of cancer cells because of the potential pharmacological applications. Several metabolites involved in glycolysis by A549 lung cancer cells can be identified by this approach, which we refer to as Correlated Cellular Spectro-Microscopy (CSM). It is noteworthy that the rate of formation or consumption of specific molecules could be quantitatively assessed by this approach. We then extend this analysis to the two-dimensional case by performing IR imaging on single cells and cell clusters, detecting variations of metabolite concentration in time and space across the sample. The molecular detail obtained from this analysis allows its use in evaluating the pharmacological effect of inhibitors of glycolytic enzymes with potential consequences for in vitro drug testing. Finally we highlight the implications of the spectral contribution from cellular metabolites on applications in IR spectral cytopathology (SCP).
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Dec 2015
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Abstract: We report on the investigation of Si and Pd/Rh chemical environments using X-ray Absorption Near Edge Spectroscopy in two different families of rare earth silicides R2PdSi3 (R = Ce, Nd, Tb, Dy, Ho, Er) and HoRh2?xPdxSi2 (x = 0, 0.5, 0.75, 1.0, 1.5, 1.8, 2.0). The Si K, Pd L3 and Rh L3 absorption edges were recorded in order to follow their changes upon the variation of 4f and 4d5s electron numbers. In both cases it was found that the Si K edge was shifted ?0.5 eV toward lower energies, relative to pure silicon. In the first family, the shift decreases with increasing number of f-electrons, while the Si K edge remains constant upon rhodium–palladium substitution.
In all cases the Pd L3 edge was shifted to higher energies relative to metallic Pd. No visible change in the Pd L3 position was observed either with a varying 4f electron count or upon Pd/Rh substitution. Also, the Rh L3 edge did not change.
For two selected members, Ho2PdSi3 and HoPd2Si2, the Wien2K’09 (LDA + U) package was used to calculate the electronic structure and the absorption edges. Si K edges were reproduced well for both compounds, while Pd L3 only exhibited a fair agreement for the second compound. This discrepancy between the Pd L3 theory and experiment for the Ho2PdSi3 sample can be attributed to the specific ordered superstructure used in the numerical calculations.
The observed changes indicate that despite possessing a formal inter-metallic character, the chemical bond between the R–Si and R–Pd interactions are different. The variation and the direction of the chemical shift of the Si K edge suggests a weak ionic character of the R–Si bonds, in agreement with the localized character of the 4f electrons. In turn, the changes of the Pd/Rh edge are consistent with a metallic band that is affected by its long range chemical environment.
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Dec 2015
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B22-Multimode InfraRed imaging And Microspectroscopy
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Diamond Proposal Number(s):
[9056, 8474]
Abstract: Testing drugs targeting basic defect in Cystic Fibrosis (CF) epithelial cell lines by FTIR analysis
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Oct 2015
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B22-Multimode InfraRed imaging And Microspectroscopy
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Diamond Proposal Number(s):
[7138, 8106]
Open Access
Abstract: Gliomas are brain tumours classified into four grades with increasing malignancy from I to IV. The development and the progression of malignant glioma largely depend on the tumour vascularization. Due to their tissue heterogeneity, glioma cases can be difficult to classify into a specific grade using the gold standard of histological observation, hence the need to base classification on a quantitative and reliable analytical method for accurately grading the disease. Previous works focused specifically on vascularization study by Fourier transform infrared (FTIR) spectroscopy, proving this method to be a way forward to detect biochemical changes in the tumour tissue not detectable by visual techniques. In this project, we employed FTIR imaging using a focal plane array (FPA) detector and globar source to analyse large areas of glioma tumour tissue sections via molecular fingerprinting in view of helping to define markers of the tumour grade. Unsupervised multivariate analysis (hierarchical cluster analysis and principal component analysis) of blood vessel spectral data, retrieved from the FPA images, revealed the fine structure of the borderline between two areas identified by a pathologist as grades III and IV. Spectroscopic indicators are found capable of discriminating different areas in the tumour tissue and are proposed as biomolecular markers for potential future use of grading gliomas.
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Jul 2015
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B22-Multimode InfraRed imaging And Microspectroscopy
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Abstract: Precise microanalytical techniques are essential in many fields such as cultural heritage materials, showing complex layered microstructures containing a wide range of materials of diverse nature and hardness. Noninvasive sample manipulation and preparation is required to avoid, as much as possible, sample contamination, which may strongly limit the materials identification. The method proposed consists in the application of thin gold or carbon protecting layers before embedding the samples in synthetic resin for microtoming. The validity and optimal procedure is checked for those materials most often found on the surface of paintings: varnishes (natural resins and wax). An artwork sample is similarly prepared and analyzed by optical microscopy (OM), scanning electron microscopy (SEM/EDS), micro-infrared spectroscopy (mu FTIR/muSR-FTIR), and X-ray diffraction (mu SR-XRD) with synchrotron light.
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Jun 2015
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