I08-Scanning X-ray Microscopy beamline (SXM)
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Dawn M.
Buchanan
,
Laura
Newsome
,
Jonathan R.
Lloyd
,
Majid
Kazemian
,
Burkhard
Kaulich
,
Tohru
Araki
,
Heath
Bagshaw
,
John
Waters
,
Gerrit
Van Der Laan
,
Alpha
N’diaye
,
Victoria S.
Coker
Diamond Proposal Number(s):
[17626]
Open Access
Abstract: Cobalt is an essential element for life and plays a crucial role in supporting the drive to clean energy, due to its importance in rechargeable batteries. Co is often associated with Fe in the environment, but the fate of Co in Fe-rich biogeochemically-active environments is poorly understood. To address this, synchrotron-based scanning X-ray microscopy (SXM) was used investigate the behaviour of cobalt at the nanoscale in Co-Fe(III)-oxyhydroxides undergoing microbial reduction. SXM can assess spatial changes in metal speciation and organic compounds helping to elucidate the electron transfer processes occurring at the cell-mineral interface and inform on the fate of cobalt in redox horizons. G. sulfurreducens was used to reduce synthetic Co-ferrihydrite as an analogue of natural cobalt-iron-oxides. Magnetite [Fe(II)/Fe(III)3O4] production was confirmed by powder X-ray diffraction (XRD), SXM and X-ray magnetic circular dichroism (XMCD) data, where best fits of the latter suggested Co-bearing magnetite. Macro-scale XAS techniques suggested Co(III) reduction occurred and complementary SXM at the nanoscale, coupled with imaging, found localised biogenic Co(III) reduction at the cell-mineral interface via direct contact with outer membrane cytochromes. No discernible localised changes in Fe speciation were detected in the reordered cobalt-iron-oxides that were formed and at the end point of the experiment only 11% Co and 1.5% Fe had been solubilised. The solid phase retention, alongside the highly localised and preferential cobalt bioreduction observed at the nanoscale is consistent with retention of Co in redox zones. This work improves our fundamental molecular-scale understanding of the fate of Co in complex environmental systems and supports the development of biogenic Co-doped magnetite for industrial applications from drug delivery systems to magnetic recording media.
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May 2022
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B07-C-Versatile Soft X-ray beamline: Ambient Pressure XPS and NEXAFS
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Diamond Proposal Number(s):
[25766]
Open Access
Abstract: Conductometric gas sensors (CGS) provide a reproducible gas response at a low cost but their operation mechanisms are still not fully understood. In this paper, we elucidate the nature of interactions between SnO2, a common gas-sensitive material, and O2, a ubiquitous gas central to the detection mechanisms of CGS. Using synchrotron radiation, we investigated a working SnO2 sensor under operando conditions via near-ambient pressure (NAP) XPS with simultaneous resistance measurements, and created a depth profile of the variable near-surface stoichiometry of SnO2−x as a function of O2 pressure. Our results reveal a correlation between the dynamically changing surface oxygen vacancies and the resistance response in SnO2-based CGS. While oxygen adsorbates were observed in this study we conclude that these are an intermediary in oxygen transport between the gas phase and the lattice, and that surface oxygen vacancies, not the observed oxygen adsorbates, are central to response generation in SnO2-based gas sensors.
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May 2022
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Krios I-Titan Krios I at Diamond
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Diamond Proposal Number(s):
[17434, 20121]
Open Access
Abstract: Endogenous viral elements (EVEs), accounting for 15% of our genome, serve as a genetic reservoir from which new genes can emerge. Nematode EVEs are particularly diverse and informative of virus evolution. We identify Atlas virus—an intact retrovirus-like EVE in the human hookworm Ancylostoma ceylanicum, with an envelope protein genetically related to GN-GC glycoproteins from the family Phenuiviridae. A cryo-EM structure of Atlas GC reveals a class II viral membrane fusion protein fold not previously seen in retroviruses. Atlas GC has the structural hallmarks of an active fusogen. Atlas GC trimers insert into membranes with endosomal lipid compositions and low pH. When expressed on the plasma membrane, Atlas GC has cell-cell fusion activity. With its preserved biological activities, Atlas GC has the potential to acquire a cellular function. Our work reveals structural plasticity in reverse-transcribing RNA viruses.
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May 2022
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I06-Nanoscience
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Filip
Krizek
,
Sonka
Reimers
,
Zdeněk
Kašpar
,
Alberto
Marmodoro
,
Jan
Michalička
,
Ondřej
Man
,
Alexander
Edström
,
Oliver J.
Amin
,
Kevin W.
Edmonds
,
Richard P.
Campion
,
Francesco
Maccherozzi
,
Sarnjeet S.
Dhesi
,
Jan
Zubáč
,
Domink
Kriegner
,
Dina
Carbone
,
Jakub
Železný
,
Karel
Výborný
,
Kamil
Olejník
,
Vít
Novák
,
Jan
Rusz
,
Juan-Carlos
Idrobo
,
Peter
Wadley
,
Tomas
Jungwirth
Diamond Proposal Number(s):
[22437]
Open Access
Abstract: The interest in understanding scaling limits of magnetic textures such as domain walls spans the entire field of magnetism from its physical fundamentals to applications in information technologies. Here, we explore antiferromagnetic CuMnAs in which imaging by x-ray photoemission reveals the presence of magnetic textures down to nanoscale, reaching the detection limit of this established microscopy in antiferromagnets. We achieve atomic resolution by using differential phase-contrast imaging within aberration-corrected scanning transmission electron microscopy. We identify abrupt domain walls in the antiferromagnetic film corresponding to the Néel order reversal between two neighboring atomic planes. Our work stimulates research of magnetic textures at the ultimate atomic scale and sheds light on electrical and ultrafast optical antiferromagnetic devices with magnetic field–insensitive neuromorphic functionalities.
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Apr 2022
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I19-Small Molecule Single Crystal Diffraction
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Lei
Ji
,
Stefan
Riese
,
Alexander
Schmiedel
,
Marco
Holzapfel
,
Maximillian
Fest
,
Jörn
Nitsch
,
Basile F. E.
Curchod
,
Alexandra
Friedrich
,
Lin
Wu
,
Hamad H.
Al Mamari
,
Sebastian
Hammer
,
Jens
Pflaum
,
Mark A.
Fox
,
David J.
Tozer
,
Maik
Finze
,
Christoph
Lambert
,
Todd B.
Marder
Diamond Proposal Number(s):
[18456]
Open Access
Abstract: Reversible conversion between excited-states plays an important role in many photophysical phenomena. Using 1-(pyren-2′-yl)-o-carborane as a model, we studied the photoinduced reversible charge-transfer (CT) process and the thermodynamic equilibrium between the locally-excited (LE) state and CT state, by combining steady state, time-resolved, and temperature-dependent fluorescence spectroscopy, fs- and ns-transient absorption, and DFT and LR-TDDFT calculations. Our results show that the energy gaps and energy barriers between the LE, CT, and a non-emissive ‘mixed’ state of 1-(pyren-2′-yl)-o-carborane are very small, and all three excited states are accessible at room temperature. The internal-conversion and reverse internal-conversion between LE and CT states are significantly faster than the radiative decay, and the two states have the same lifetimes and are in thermodynamic equilibrium.
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Apr 2022
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I03-Macromolecular Crystallography
I04-Macromolecular Crystallography
I24-Microfocus Macromolecular Crystallography
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Nathan R.
Zaccai
,
Zuzana
Kadlecova
,
Veronica
Kane Dickson
,
Kseniya
Korobchevskaya
,
Jan
Kamenicky
,
Oleksiy
Kovtun
,
Perunthottathu K.
Umasankar
,
Antoni G.
Wrobel
,
Jonathan G. G.
Kaufman
,
Sally R.
Gray
,
Kun
Qu
,
Philip R.
Evans
,
Marco
Fritzsche
,
Filip
Sroubek
,
Stefan
Höning
,
John A. G.
Briggs
,
Bernard T.
Kelly
,
David J.
Owen
,
Linton M.
Traub
Open Access
Abstract: Clathrin-mediated endocytosis (CME) is the main mechanism by which mammalian cells control their cell surface proteome. Proper operation of the pivotal CME cargo adaptor AP2 requires membrane-localized Fer/Cip4 homology domain-only proteins (FCHO). Here, live-cell enhanced total internal reflection fluorescence–structured illumination microscopy shows that FCHO marks sites of clathrin-coated pit (CCP) initiation, which mature into uniform-sized CCPs comprising a central patch of AP2 and clathrin corralled by an FCHO/Epidermal growth factor potential receptor substrate number 15 (Eps15) ring. We dissect the network of interactions between the FCHO interdomain linker and AP2, which concentrates, orients, tethers, and partially destabilizes closed AP2 at the plasma membrane. AP2’s subsequent membrane deposition drives its opening, which triggers FCHO displacement through steric competition with phosphatidylinositol 4,5-bisphosphate, clathrin, cargo, and CME accessory factors. FCHO can now relocate toward a CCP’s outer edge to engage and activate further AP2s to drive CCP growth/maturation.
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Apr 2022
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I20-Scanning-X-ray spectroscopy (XAS/XES)
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Diamond Proposal Number(s):
[21441]
Open Access
Abstract: Selenium (Se) is a toxic contaminant with multiple anthropogenic sources, including 79Se from nuclear fission. Se mobility in the geosphere is generally governed by its oxidation state, therefore understanding Se speciation under variable redox conditions is important for the safe management of Se contaminated sites. Here, we investigate Se behavior in sediment groundwater column systems. Experiments were conducted with environmentally relevant Se concentrations, using a range of groundwater compositions, and the impact of electron-donor (i.e., biostimulation) and groundwater sulfate addition was examined over a period of 170 days. X-Ray Absorption Spectroscopy and standard geochemical techniques were used to track changes in sediment associated Se concentration and speciation. Electron-donor amended systems with and without added sulfate retained up to 90% of added Se(VI)(aq), with sediment associated Se speciation dominated by trigonal Se(0) and possibly trace Se(-II); no Se colloid formation was observed. The remobilization potential of the sediment associated Se species was then tested in reoxidation and seawater intrusion perturbation experiments. In all treatments, sediment associated Se (i.e., trigonal Se(0)) was largely resistant to remobilization over the timescales of the experiments (170 days). However, in the perturbation experiments, less Se was remobilized from sulfidic sediments, suggesting that previous sulfate-reducing conditions may buffer Se against remobilization and migration.
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Apr 2022
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I11-High Resolution Powder Diffraction
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Tianxiang
Chen
,
Yong
Wang
,
Qi
Xue
,
Ching Kit Tommy
Wun
,
Pui Kin
So
,
Ka Fu
Yung
,
Tai-Sing
Wu
,
Yun-Liang
Soo
,
Keita
Taniya
,
Sarah
Day
,
Chiu C.
Tang
,
Zehao
Li
,
Bolong
Huang
,
Shik Chi Edman
Tsang
,
Kwok-Yin
Wong
,
Tsz Woon Benedict
Lo
Diamond Proposal Number(s):
[26404]
Open Access
Abstract: The large-scale synthesis of supported multinuclear catalysts with controllable metal nuclearity and constituent composition remains a formidable challenge. We report the stepwise assembly of supported atom-precise bimetallic ligand-mediated metal ensembles (LMMEs) by exploiting the underlying principles of coordination chemistry and solid-state chemistry. Lewis di-basic 2-methylimidazole is used to bridge multiple Cu2+ and M2+ (M = Co, Ni, Cu, and Zn) ions within ZSM-5 zeolites. We observe the metal constituent composition of the LMMEs by mass spectroscopy. The adjacent metal nuclei in the LMMEs offer substantial synergistic effects that enhance the catalytic performance by at least an order of magnitude in the model catalytic “click” reaction. It is envisaged that this stepwise assembly approach to develop supported multinuclear catalysts with atom precision could effectively bridge homogeneous and heterogeneous catalysis.
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Apr 2022
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I12-JEEP: Joint Engineering, Environmental and Processing
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Diamond Proposal Number(s):
[17222]
Abstract: Component failure due to cold dwell fatigue of titanium and its alloys is a long-standing problem which has significant safety and economic implications to the aviation industry. This can be addressed by understanding the governing mechanisms of time dependent plasticity behaviour of Ti at low temperatures. Here, stress relaxation tests were performed at four different temperatures on three major alloy systems: commercially pure titanium (two alloys with different oxygen content), Ti-6Al-4V (two microstructures with differing phase fractions) and Ti-6Al-2Sn-4Zr-Mo (two alloys with different Mo content =2 or 6, and portion of phase). Key parameters controlling the time dependent plasticity were determined as a function of temperature. Both activation volume and energy were found to increase with temperature in all six alloys. It was found that the dwell fatigue effect is more significant by oxygen alloying but is suppressed by the addition of Mo. The presence of the phase did not strongly affect the dwell fatigue, however, it was suppressed at high temperature due to the low strain rate and strain rate sensitivity.
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Apr 2022
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I12-JEEP: Joint Engineering, Environmental and Processing
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Chun
Huang
,
Matthew
Wilson
,
Kosuke
Suzuki
,
Enzo
Liotti
,
Thomas
Connolley
,
Oxana
Magdysyuk
,
Stephen
Collins
,
Frederic
Van Assche
,
Matthieu N
Boone
,
Matthew C.
Veale
,
Andrew
Lui
,
Rhian-Mair
Wheater
,
Chu Lun Alex
Leung
Diamond Proposal Number(s):
[23400]
Open Access
Abstract: The performance of Li+ ion batteries (LIBs) is hindered by steep Li+ ion concentration gradients in the electrodes. Although thick electrodes (≥300 µm) have the potential for reducing the proportion of inactive components inside LIBs and increasing battery energy density, the Li+ ion concentration gradient problem is exacerbated. Most understanding of Li+ ion diffusion in the electrodes is based on computational modeling because of the low atomic number (Z) of Li. There are few experimental methods to visualize Li+ ion concentration distribution of the electrode within a battery of typical configurations, for example, coin cells with stainless steel casing. Here, for the first time, an interrupted in situ correlative imaging technique is developed, combining novel, full-field X-ray Compton scattering imaging with X-ray computed tomography that allows 3D pixel-by-pixel mapping of both Li+ stoichiometry and electrode microstructure of a LiNi0.8Mn0.1Co0.1O2 cathode to correlate the chemical and physical properties of the electrode inside a working coin cell battery. An electrode microstructure containing vertically oriented pore arrays and a density gradient is fabricated. It is shown how the designed electrode microstructure improves Li+ ion diffusivity, homogenizes Li+ ion concentration through the ultra-thick electrode (1 mm), and improves utilization of electrode active materials.
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Apr 2022
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