I18-Microfocus Spectroscopy
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Anita
Cadoux
,
Giada
Iacono-marziano
,
Antonio
Paonita
,
Etienne
Deloule
,
Alessandro
Aiuppa
,
G.
Nelson Eby
,
Michela
Costa
,
Lorenzo
Brusca
,
Kim
Berlo
,
Kaltina
Geraki
,
Tamsin A.
Mather
,
David M.
Pyle
,
Ida
Di Carlo
Diamond Proposal Number(s):
[8797]
Abstract: Measuring the low bromine abundances in Earth’s materials remains an important challenge in order to constrain the geodynamical cycle of this element. Suitable standard materials are therefore required to establish reliable analytical methods to quantify Br abundances. In this study we characterise 21 Br-doped glasses synthesized from natural volcanic rocks of mafic to silicic compositions, in order to produce a new set of standards for Br analyses using various techniques. The nominal Br contents (amounts of Br loaded in the experimental samples) of 15 of 21 glasses were confirmed within 20% by instrumental neutron activation analysis (INAA). Using this new set of standards, we compare three micro-analytical approaches to measure Br contents in silicate glasses: synchrotron X-ray fluorescence (SR-XRF), laser ablation-inductively coupled plasma mass spectrometry (LA-ICP-MS), and secondary ion mass spectrometry (SIMS). With SR-XRF, the Br contents of the standard glasses were determined with the highest accuracy (< 10% for Br ≥ 10 ppm; > 25% for Br ≤ 5 ppm), and high precision (< 10% for Br contents > 10 ppm; 20-30% for Br ≤ 10 ppm). The detection limit was estimated to be less than 1 ppm Br. All those factors combined with a high spatial resolution (5x5 μm for the presented measurements), means that SR-XRF is well suited to determine the low Br abundance in natural volcanic glasses (crystal-hosted melt inclusions or matrix glasses of crystallized samples). At its current stage of development, the LA-ICP-MS method allows the measurement of hundreds to thousands ppm Br in silicate glasses with a precision and accuracy generally within 20 %. The Br detection limit of this method has not been estimated but its low spatial resolution (90 μm) currently prevents its use to characterise natural volcanic glasses, however it is fully appropriate to analyse super liquidus or sparsely phyric, Br-rich experimental charges. Our study shows that SIMS appears to be a promising technique to measure the low Br contents of natural volcanic glasses. Its spatial resolution is relatively good (~ 15 μm) and, similarly to SR-XRF, the detection limit is estimated to be ≤ 1 ppm. Using our new set of standards, the Br contents of two MPI-DING reference glasses containing less than 1.2 ppm of Br were reproduced with precision < 5% and accuracy < 20%. Moreover, SIMS presents the advantage of being a more accessible instrument than SR-XRF and data processing is more straightforward.
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Feb 2017
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I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[15802]
Open Access
Abstract: Bacteria acquire phosphate (Pi) by maintaining a periplasmic concentration below environmental levels. We recently described an extracellular Pi buffer which appears to counteract the gradient required for Pi diffusion. Here, we demonstrate that various treatments to outer membrane (OM) constituents do not affect the buffered Pi because bacteria accumulate Pi in the periplasm, from which it can be removed hypo-osmotically. The periplasmic Pi can be gradually imported into the cytoplasm by ATP-powered transport, however, the proton motive force (PMF) is not required to keep Pi in the periplasm. In contrast, the accumulation of Pi into the periplasm across the OM is PMF-dependent and can be enhanced by light energy. Because the conventional mechanism of Pi-specific transport cannot explain Pi accumulation in the periplasm we propose that periplasmic Pi anions pair with chemiosmotic cations of the PMF and millions of accumulated Pi pairs could influence the periplasmic osmolarity of marine bacteria.
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May 2020
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I18-Microfocus Spectroscopy
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Anouk M.
Borst
,
Martin P.
Smith
,
Adrian
Finch
,
Guillaume
Estrade
,
Cristina
Villanova-de-benavent
,
Peter
Nason
,
Eva
Marquis
,
Nicola J.
Horsburgh
,
Kathryn M.
Goodenough
,
Cheng
Xu
,
Jindřich
Kynický
,
Kalotina
Geraki
Diamond Proposal Number(s):
[14793, 15903]
Open Access
Abstract: Global resources of heavy Rare Earth Elements (REE) are dominantly sourced from Chinese regolith-hosted ion-adsorption deposits in which the REE are inferred to be weakly adsorbed onto clay minerals. Similar deposits elsewhere might provide alternative supply for these high-tech metals, but the adsorption mechanisms remain unclear and the adsorbed state of REE to clays has never been demonstrated in situ. This study compares the mineralogy and speciation of REE in economic weathering profiles from China to prospective regoliths developed on peralkaline rocks from Madagascar. We use synchrotron X-ray absorption spectroscopy to study the distribution and local bonding environment of Y and Nd, as proxies for heavy and light REE, in the deposits. Our results show that REE are truly adsorbed as easily leachable 8- to 9-coordinated outer-sphere hydrated complexes, dominantly onto kaolinite. Hence, at the atomic level, the Malagasy clays are genuine mineralogical analogues to those currently exploited in China.
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Dec 2020
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I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[15129, 19516]
Abstract: The complexity and heterogeneity of bone chemistry makes it difficult to discern information on physiological and taphonomic processes stored within the bone matrix. Analysis of archaeological and palaeontological bone becomes more difficult because in many cases the most pivotal specimens are too scientifically valuable for destructive analysis. This problem is further escalated by the fact that the heterogeneity of the bone may cause small “pockets” of preservation that can be missed during sampling. Therefore, a non-destructive technique that can spatially resolve such heterogeneity within the bone is needed. Here we use microfocus, non-destructive synchrotron-based X-Ray Fluorescence (XRF) imaging and X-ray Absorption Spectroscopy (XAS) to map the organic constituents within extant and fossil bovid bones. XAS analysis of sulfur allowed organic sulfur (within collagen as methionine) to be distinguished from inorganic sulfate (within bone apatite). Mapping and quantification of organic sulfur within the samples were made by setting the beam to the methionine resonance, allowing for the detection, distribution and quantification of collagen present by using organic sulfur as an internal marker. Results show organic sulfur to be distributed in small “pockets” throughout the bone matrix in both extant and fossil specimens. Significant loss of collagen (organic sulfur) was seen in specimens between 100 ka and 650 ka with little organic sulfur preservation persisting after this date. Comparison of residual organic sulfur concentrations as a function of sample age revealed a second order rate law for organic sulfur oxidation (k ≈ 1 × 10−5 y−1) within bone. These results show that non-destructive, synchrotron-based XRF mapping of organic sulfur is a useful tool for not only calculating rates of collagen degradation through time, but also identifying areas of potential collagen preservation for other paleobiological applications such as proteomics and stable isotope analyses.
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Jan 2019
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I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[10615]
Abstract: Brain iron accumulation with ageing may play a role in senescent processes, with age-related increases in basal ganglia R2 and R2* observed in man and associated with increased iron. Here, we show similar increases in R2 and R2* in the basal ganglia of ageing C57BL/6J mice. Quantitatively measured increased iron by synchrotron radiation X-ray fluorescence elemental iron mapping suggests the increased R2 and R2* values may indeed arise from higher iron concentrations. Thus, iron dyshomeostasis may play a role in ageing and MR relaxometry may be used to monitor these ageing processes.
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Jun 2015
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B16-Test Beamline
I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[11372, 12446]
Open Access
Abstract: We present further analyses of a previous experiment published in 2016 where the distribution, concentration and correlation of iron, zinc, copper and sulphur in the choroid of the eye in young and aged old world primates (Macaca fascicularis) was studied with synchrotron X-ray fluorescence with a 2 μm resolution. The results indicate that iron accumulates in hotspots in the choroid with age with fluorescence intensity ranging from 2- to 7-fold (1002–3752 ppm) the mean level in the choroidal stroma (500 ppm) and maximum iron levels in blood vessel lumina. Iron hotspots with iron ppm > 1000 preferentially contained Fe3+ as demonstrated by Perls staining. There was a strong spatial co-localisation and correlation between copper and zinc (Pearson’s correlation coefficient 0.97), and both elements with sulphur in the choroid of young animals. However, these are reduced in the choroid of aged animals and lost in the iron hotspots. The lack of proportional co-distribution suggests that iron accumulation does not induce a concomitant increase in zinc, copper or zinc-, copper-metalloproteins. It is possible that the iron hotspots are ferritin or hemosiderin molecules loaded with Fe3+ in stable, insoluble, non-toxic complexes without a significant oxidative environment.
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Oct 2018
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I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[585]
Abstract: Combined microfocus XAS and XRD analysis of alpha-particle radiation damage haloes around thorium-containing monazite in Fe-rich biotite reveals changes in both short- and long-range order. The total alpha-particles flux derived from the Th and U in the monazite over 1.8 Ga was 0.022 alpha particles per atomic component of the monazite and this caused increasing amounts of structural damage as the monazite emitter is approached. Short-range order disruption revealed by Fe K-edge EXAFS is manifest by a high variability in Fe-Fe bond lengths and a marked decrease in coordination number. XANES examination of the Fe K-edge shows a decrease in energy of the main absorption by up to 1 eV, revealing reduction of the Fe3+ components of the biotite by interaction with the He-4(2)2+, the result of low and thermal energy electrons produced by the cascade of electron collisions. Changes in d spacings in the XRD patterns reveal the development of polycrystallinity and new domains of damaged biotite structure with evidence of displaced atoms due to ionization interactions and nuclear collisions. The damage in biotite is considered to have been facilitated by destruction of OH groups by radiolysis and the development of Frenkel pairs causing an increase in the trioctahedral layer distances and contraction within the trioctahedral layers. The large amount of radiation damage close to the monazite can be explained by examining the electronic stopping flux.
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Aug 2013
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I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[15771]
Abstract: This research aimed to find the best phenotype of the brown algae Fucus vesiculosus (kelp) which has the greater potential to become a sorption byproduct for Zn removal from contaminated waters. Thus, the Zn uptake capacity and sorption mechanisms of the kelp collected from the Baltic Sea shore was, for the first time, investigated under various conditions, and compared to the phenotype habiting on the Irish Sea shore. Sorption studies were performed investigating the effect of algal dosage, Zn sources as well as algal harvesting time of the year on Zn uptake capacity. The results suggested that the Baltic algae is a better biosorbent for Zn uptake. Sorption mechanisms were studied by employing various indirect and direct approaches, more importantly, including high resolution synchrotron X-Ray Fluorescence and X-Ray Absorption Spectroscopy (XAS) and molecular modelling (MM). The results revealed that alginate and cellulose are among the main polysaccharide bonding Zn at algal surface, via coordination with O atoms from carboxyl and hydroxyl groups. XAS results giving direct measurements of Zn bonding environment on algal surface are supported by MM outputs and suggested that Zn is surrounded by ca. 5 O atoms at interatomic distances varying from 1.94 to 2.02 Å. The results contribute to understanding sorption mechanisms which can further lead to finding the best eluent for Zn desorption from the used biomass, bio sorbent reconditioning and reuse in multiple sorption desorption cycles as well as process optimization before industrial scaling up.
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Aug 2019
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I18-Microfocus Spectroscopy
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Christopher J.
Serpell
,
Reida N.
Rutte
,
Kalotina
Geraki
,
Elzbieta
Pach
,
Markus
Martincic
,
Magdalena
Kierkowicz
,
Sonia
De Munari
,
Kim
Wals
,
Ritu
Raj
,
Belen
Ballesteros
,
Gerard
Tobias
,
Daniel C.
Anthony
,
Benjamin G.
Davis
Diamond Proposal Number(s):
[11203]
Open Access
Abstract: The desire to study biology in situ has been aided by many imaging techniques. Among these, X-ray fluorescence (XRF) mapping permits observation of elemental distributions in a multichannel manner. However, XRF imaging is underused, in part, because of the difficulty in interpreting maps without an underlying cellular ‘blueprint’; this could be supplied using contrast agents. Carbon nanotubes (CNTs) can be filled with a wide range of inorganic materials, and thus can be used as ‘contrast agents’ if biologically absent elements are encapsulated. Here we show that sealed single-walled CNTs filled with lead, barium and even krypton can be produced, and externally decorated with peptides to provide affinity for sub-cellular targets. The agents are able to highlight specific organelles in multiplexed XRF mapping, and are, in principle, a general and versatile tool for this, and other modes of biological imaging.
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Oct 2016
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B18-Core EXAFS
I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[4939]
Open Access
Abstract: The physicochemical state of a catalyst is a key factor in determining both activity and selectivity; however these materials are often not structurally or compositionally homogeneous. Here we report on the 3-dimensional imaging of an industrial catalyst, Mo- promoted colloidal Pt supported on carbon. The distribution of both the active Pt species and Mo promoter have been mapped over a single particle of catalyst using microfocus X-ray Fluorescence computed tomography. X-ray absorption near edge spectroscopy (XANES) and extended X-ray absorption fine structure revealed a mixed local coordination environment, including the presence of both metallic Pt clusters and Pt chloride species, but also no direct interaction between the catalyst and Mo promoter. We also report on the benefits of scanning μ-XANES computed tomography for chemical imaging, allowing for 2- and 3-dimensional mapping of the local electronic and geometric environment, in this instance for both the Pt catalyst and Mo promoter throughout the catalyst particle.
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Nov 2014
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