I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[28557]
Open Access
Abstract: Swelling of shale in response to interaction with water is an important consideration within subsurface energy systems. In the case of waste disposal, swelling can provide important barriers around the waste and enhance the sealing ability of rocks. For shale gas exploration purpose, however, swelling may cause wellbore instability. Therefore, a careful study of shale swelling is critical for subsurface energy related applications. Here, the swelling effects of shale were imaged at nanoscale using an advanced synchrotron Transmission X-ray Microscopy (TXM) imaging technique for the first time, with a spatial resolution down to 40.9 nm. Organic matter and clays within the analysed sample were observed to display large swelling effects which resulted in a 50% reduction in porosity. Strain maps generated using Digital Volume Correlation (DVC) show deformation and significant strain were mostly localized to between the contact boundaries of sharp brittle minerals and softer organic matter and clays. This is the first study, to our knowledge, to directly image the swelling deformation of shale at the tens of nanometer scale and provide local information on the strain evolution.
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Jul 2023
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I11-High Resolution Powder Diffraction
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Diamond Proposal Number(s):
[26409]
Abstract: Rozenite (FeSO4·4H2O) is a candidate mineral component of the polyhydrated sulfate deposits on the surface and in the subsurface of Mars. To better understand its behavior at temperature conditions prevailing on the Martian surface and aid its identification in ongoing and future Rover missions, we have carried out a combined experimental and computational study of the mineral’s structure and properties. We collected neutron powder difraction data at temperatures ranging from 21–290 K, room-temperature synchrotron X-ray data and Raman spectra. Moreover, first-principles calculations of the vibrational properties of rozenite were carried out to aid the interpretation of the Raman spectra. We found, in contrast to a recent Raman spectroscopic study, that there are no phase transitions between 21 and 290 K. We confirm the heavy atom structure reported in the literature (space group P21/n) to be correct and present, for the first time, an unconstrained determination of the H atom positions by means of high-resolution neutron powder diffraction, and report the complete crystal structure at 290 and 21 K. The anisotropy of the thermal expansion of the lattice vectors is αa:αb:αc = 1.00:2.19:1.60 at 285 K. Subsequent analysis of the thermal expansion tensor revealed highly anisotropic behavior as reflected in negative thermal expansion approximately ||〈101⟩ and ratios of the tensor eigenvalues of α1:α2:α3 = −1:3.74:5.40 at 285 K. Lastly, we demonstrated how combining Raman spectroscopy and X-ray difraction of the same sample sealed inside a capillary with complementary first-principles calculations yields accurate reference Raman spectra. This workflow enables the construction of a reliable Raman spectroscopic database for planetary exploration, which will be invaluable to shed light on the geological past as well as in identifying resources for the future colonization of planetary bodies throughout the solar system.
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Jun 2023
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I11-High Resolution Powder Diffraction
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Abstract: Magnesium sulfate hydrates are considered important rock-forming minerals on the outer three Galilean moons of Jupiter (i.e., Europa, Ganymede, Callisto) and, alongside ferrous sulfate hydrates, are promising candidate minerals for the widespread sulfate deposits that occur in the equatorial region of Mars. In such extraterrestrial environments, these minerals experience extreme high-pressure conditions in the interiour of the Galilean moons and low temperature conditions on the surface of these moons and Mars. The aim of this thesis is to understand the structural stability, compressibility, and thermal expansion of these compounds in such extreme environments and aid their identification in ongoing and future space missions. Most magnesium sulfate hydrates lack accurate reference elastic tensors, which hinders their seismological identification in lander missions on the icy moons of the outer solar system, as envisioned for the near future. In this thesis, the accuracy of recent advancements in density functional theory to predict the compressibility and elastic constants of icy satellite candidate minerals (i.e., epsomite (MgSO₄·7H₂O), gypsum (CaSO₄·2H₂O), carbon dioxide (CO₂), and benzene (C₆H₆)) was assessed by benchmarking them against experimental reference data from the literature. Key findings are that density functional theory calculations do not yield elastic constants accurate enough to be used as a reference for the seismic exploration of icy moons. However, the bulk compressibility of such materials is very accurately reproduced by density functional theory, which was therefore used to predict the compressibility of the icy satellite candidate minerals starkeyite (MgSO₄·4H₂O) and cranswickite (MgSO₄·4H₂O). Knowledge of the compressibility of such minerals is critical to model mantle processes (e.g., salt diaprisim, plate tectonics, subduction) and the density structure of the outer three Galilean moons. The thermal expansion and structural stability of three sulfate minerals (i.e., rozenite (FeSO₄·4H₂O), starkeyite, and cranswickite) was characterised for the first time using neutron diffraction. Cranswickite transforms to starkeyite at 330 K, well above the maximum surface temperature of 308 K hitherto reported on Mars. Starkeyite likely undergoes a structural phase transition at around 245 K. The structure of this proposed low-temperature polymorph could not be determined but would be of great interest since the temperature drops below 245 K on equatorial Mars at night-time. Starkeyite was also studied by means of synchrotron X-ray diffraction but suffered radiation damage. No phase transition was observed in rozenite from 290 – 21 K, which contrasts with Raman data reported in the literature, where sharpening of vibrational modes upon cooling was misinterpreted as mode splitting and evidence for two phase transitions at temperatures relevant to the Martian surface. First-principles phonon frequency calculations provide evidence supporting the absence of vibrational mode splitting. A workflow to obtain reliable reference Raman spectra for space exploration was proposed and an optical centre stick for the simultaneous acquisition of neutron diffraction and Raman spectroscopy data at the HRPD instrument was commissioned. Lastly, the structure of a polymorph of hexahydrite (MgSO₄·6H₂O), most recently proposed in the literature, was shown to be unambiguously wrong.
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May 2023
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I18-Microfocus Spectroscopy
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Ivan N.
Pidchenko
,
John N.
Christensen
,
Martin
Kutzschbach
,
Konstantin
Ignatyev
,
Ignasi
Puigdomenech
,
Eva-Lena
Tullborg
,
Nick M. W.
Roberts
,
E. Troy
Rasbury
,
Paul
Northrup
,
Ryan
Tappero
,
Kristina O.
Kvashnina
,
Thorsten
Schäfer
,
Yohey
Suzuki
,
Henrik
Drake
Diamond Proposal Number(s):
[28254]
Open Access
Abstract: Uptake of uranium (U) by secondary minerals, such as carbonates and iron (Fe)-sulfides, that occur ubiquitously on Earth, may be substantial in deep anoxic environments compared to surficial settings due to different environment-specific conditions. Yet, knowledge of U reductive removal pathways and related fractionation between 238U and 235U isotopes in deep anoxic groundwater systems remain elusive. Here we show bacteria-driven degradation of organic constituents that influences formation of sulfidic species facilitating reduction of geochemically mobile U(VI) with subsequent trapping of U(IV) by calcite and Fe-sulfides. The isotopic signatures recorded for U and Ca in fracture water and calcite samples provide additional insights on U(VI) reduction behaviour and calcite growth rate. The removal efficiency of U from groundwater reaching 75% in borehole sections in fractured granite, and selective U accumulation in secondary minerals in exceedingly U-deficient groundwater shows the potential of these widespread mineralogical sinks for U in deep anoxic environments.
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Apr 2023
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[15506]
Open Access
Abstract: Determination of mineral texture and diagenetic features in mudstones is crucial to reveal the history of their pore systems and provides key information to predict their future sealing ability, reactivity and storage capacity for sequestered CO2, hydrogen storage or nuclear waste disposal. To understand the spatial transport and storage of fluids, it is necessary to map the distribution of minerals and fractures in three dimensions (3D). This study proposes a novel, multi-scale three-dimensional (3D) imaging method, i.e., a combination of synchrotron- sourced micro- x-ray tomography and lab- sourced nano-tomography, to investigate the sedimentology and diagenetic features of the Bowland Shale, one of the most volumetrically important mudstone-dominated systems in the UK. Diagenetic minerals have been identified and characterised, including pyrite, calcite, kaolinite, illite, chlorite, dolomite, ankerite and authigenic quartz (micro-sized quartz and quartz overgrowths). Multi-scale 3D images provide detailed information about dolomite-ankerite zonation and carbonate dissolution pores. These features cannot be observed or quantified by conventional 2D methods, and they have not been reported in this subject area before. Using these results, potential reactions during carbon storage and other subsurface storage applications are predicted.
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Apr 2023
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I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[15947]
Open Access
Abstract: The alteration of olivine-rich rocks to serpentine minerals, (hydr)oxides, and aqueous hydrogen through serpentinization is long thought to have influenced the distribution of habitable environments on early Mars and the evolution of the early Martian hydrosphere and atmosphere. Nevertheless, the planetary importance of Martian serpentinization has remained a matter of debate. To constrain the process and products of Martian serpentinization, we studied serpentinized iron-rich olivines from the 1.1-billion-year Duluth Complex. These data indicate that serpentinized iron-rich olivine would have been accompanied by a fivefold increase in hydrogen production relative to serpentinized terrestrial mantle peridotites. In contrast to previous expectations, this style of serpentinization yields hisingerite as the dominant iron serpentine mineral at comparatively low temperature and pH, consistent with meteorite mineralogy and in situ rover data. The widespread occurrence of oxidized iron-bearing phyllosilicates in highly magnetized regions of the Martian crust supports the hypothesis that serpentinization was more pervasive on early Mars than currently estimated.
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Feb 2023
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E01-JEM ARM 200CF
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Open Access
Abstract: An understanding the organic matter (OM) in primitive interplanetary materials can provide us with important constraints on both the early solar system carbon cycle and incipient prebiotic synthesis before the origin of life. As a window to the past, primitive chondrites preserve the most pristine record of parent body, nebular and interstellar components and the occurrence of OM in them has been shown in both soluble (SOM) (1) and insoluble (IOM) (2) form. Total organic carbon (TOC) abundance reaches ~3-4 wt% in the most primitive carbonaceous chondrite (CCs) (3), such as Ivuna-type chondrites (CIs) – thus making them highly desirable for the OM studies, and relevant to the study of Asteroid 162173 Ryugu samples from the Hayabusa-2 mission.
A combination of both SOM and IOM analysis of organic bulk meteorite separates together with in-situ analysis of OM have provided a comprehensive account of chondritic OM (4). In the case of in-situ analysis, the combination of both scanning (SEM) and transmission electron microscopy (TEM) together with soft X-Ray scanning transmission microscopy (STXM) have shown the presence of micron to submicron distinctive organic particles (OPs) (5). Carbon K-edge X-ray absorption near edge structure (XANES) has shown the aromatic-carbonyl-carboxyl chemical nature of these organic particles (5). In addition, aromatic-poorer and carboxylic-richer diffuse OM (6) within both amorphous and phyllosilicate occurs as well.
As observation techniques are getting better, aberration corrected TEM coupled with electron energy loss spectroscopy (EELS) might provide the same results as carbon XANES, but with higher image magnification, rapid data acquisition and better accessibility. In this context, we present the results of a comparative carbon K-edge XANES and EELS study of CI meteorite Ivuna. An approximately 100 nm lamella of the Ivuna meteorite was prepared using focused ion beam (FIB)-SEM with the Helios 5 Hydra DualBeam (CEITEC, Masaryk University, Czechia) and analysed by TEM-EELS with the JEOL ARM200CF (ePSIC, Diamond Light Source, UK) and STXM-XANES at Beamline BL19A of the KEK Photon Factory, Japan. We observed that (I) XANES on samples that did not experience TEM-EELS are in agreement with the previous studies of aromatic-carbonyl-carboxylic macromolecular OPs and IOM, while (II) the TEM-EELS of OPs show aromatic-carbonyl functional chemistry but with amorphous carbon convoluting the carboxylic peak, and aromatic-poor spectra with a sharp carbonate peak in diffuse OM. The difference between XANES and EELS particularly in the diffuse OM can be interpreted by electron-beam damage. Thickness and e-beam damage leads to amorphous C formation in the OPs. In the case of more labile OM in the phyllosilicate, its change by heating and oxidation is expected.
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Feb 2023
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I12-JEEP: Joint Engineering, Environmental and Processing
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Diamond Proposal Number(s):
[29710]
Open Access
Abstract: The origin of jaws and teeth remains contentious in vertebrate evolution. ‘Placoderms’ (Silurian-Devonian armoured jawed fishes) are central to debates on the origins of these anatomical structures. ‘Acanthothoracids’ are generally considered the most primitive ‘placoderms’. However, they are so far known mainly from disarticulated skeletal elements that are typically incomplete. The structure of the jaws—particularly the jaw hinge—is poorly known, leaving open questions about their jaw function and comparison with other placoderms and modern gnathostomes. Here we describe a near-complete ‘acanthothoracid’ upper jaw, allowing us to reconstruct the likely orientation and angle of the bite and compare its morphology with that of other known ‘placoderm’ groups. We clarify that the bite position is located on the upper jaw cartilage rather than on the dermal cheek and thus show that there is a highly conserved bite morphology among most groups of ‘placoderms’, regardless of their overall cranial geometry. Incorporation of the dermal skeleton appears to provide a sound biomechanical basis for jaw origins. It appears that ‘acanthothoracid’ dentitions were fundamentally similar in location to that of arthrodire ‘placoderms’, rather than resembling bony fishes. Irrespective of current phylogenetic uncertainty, the new data here resolve the likely general condition for ‘placoderms’ as a whole, and as such, ancestral morphology of known jawed vertebrates.
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Feb 2023
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I12-JEEP: Joint Engineering, Environmental and Processing
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Open Access
Abstract: NASA, ESA and the UK are collaborating on a Mars Sample Return (MSR) mission which aims to retrieve drill cores of Martian rock for terrestrial analysis, starting with the Mars2020 rover which landed successfully in Jezero Crater in Feb. 2021. Up to 30 samples, inside sealed titanium sample tubes, are planned to be returned to Earth in later missions. Due to the potential for back-contamination of Earth from possible extant life on Mars, strict contamination control measures must be taken for the purposes of planetary protection, as well as to prevent contamination of the samples by Earth’s environment. These measures place restrictions on the way measurements can be performed on the samples until they have been sterilised or judged safe. As the first step of scientific analysis, all samples will undergo a set of measurements called Pre-Basic Characterisation. Pre-BC will include weighing, X-ray CT, and magnetic measurements. These data along with Basic Characterisation data will be used to decide experimental plans for multi instrument analyses on the Mars samples. X-ray Diffraction (XRD) is currently planned for a later stage of sample analysis after the sample tubes have been opened due to limitations with conventional commercial X-ray diffractometers. [1, 2]
While a conventional X-ray tube cannot provide an appropriate X-ray beam, a synchrotron source is capable of much higher intensities and precise wavelength selectivity. Synchrotron facilities also allow more suitable diffraction geometries for the size and shape of sample expected from MSR. We have carried out experiments with the help of Diamond Light Source’s I12-JEEP beamline to test the feasibility of XRD analysis of samples in sealed Mars2020 sample tubes and suitable instrument parameters for XRD of these samples. Titanium tubes were prepared as analogues to Mars2020 sample tubes. Three different geological analogues were used in place of the Mars samples: an Icelandic basaltic sand, a calcareous mudstone from Watchet Bay, UK, and a Devonian Fine Grained Sandstone, UK. Two different methods for preventing unwanted diffraction signal from the sample tube walls have also been tested: subtracting the diffraction spectrum of an empty tube from the tube-with-sample spectrum, and using energy-dispersive X-ray diffraction to exclude tube wall signal. We show that quantitative XRD phase analysis can be successfully carried out on returned Mars samples in unopened sample tubes using a synchrotron X-ray source, and thus could be included in the Pre-BC phase of returned sample science. This would provide mineralogical data much earlier in the sample science process, improving decision-making around sample science, curation, and handling.
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Feb 2023
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I12-JEEP: Joint Engineering, Environmental and Processing
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Open Access
Abstract: Deformation bands, or tabular zones of localised strain, are a common manifestation of deformation in upper crustal sedimentary rocks. Any mining or energy-related engineering applications must consider the possibility of reactivating these pre-existing failure planes because doing so can cause seismicity and compartmentalise the reservoir. However, there has only been a small amount of research done on laboratory-induced deformation in rocks with natural deformation features.
On a low porosity bioclastic calcarenite from the Cotiella Basin, Spanish Pyrenees, our current experimental work aims to capture, for the first time to our knowledge, the dominant failure mechanisms during the reactivation of natural deformation bands oriented at different angles to the principal stress direction. At the I12-JEEP beamline at the synchrotron facility of Diamond Light Source, UK, we carried out triaxial compression experiments using a modified version of the Mjolnir cell used by Cartwright-Taylor et al., (2022) to examine how these highly heterogeneous rocks respond to additional mechanical deformation. During the deformation experiments, 4D (time and space) x-ray tomography images (8 m voxel size resolution) were acquired. We tested confining pressures between 10 MPa and 30 MPa.
The mechanical data demonstrate that the existence of natural deformation features within the tested samples weakens the material. For instance, solid samples of the host rock subjected to the same confining pressures had higher peak differential stresses. Additionally, our findings demonstrate that new deformation bands form as their angle, θ, to σ1 increases, while the reactivation of pre-exiting deformation bands in this low porosity carbonate only occurs for dipping angles close to 70o. The spatio-temporal relationships between the naturally occurring and laboratory-induced deformation bands and fractures were investigated using time-resolved x-ray tomography and Digital Volume Correlation (DVC). Volumetric and shear strain fields were calculated using the SPAM software (Stamati et al., 2020). The orientation of the recently formed failure planes is influenced by the orientation of the pre-existing bands, as well as their width and the presence (or absence) of porosity along their length. Additionally, pre-existing secondary deformation features found in the tested material trigger additional mechanical damage that either promotes the development or deflects the new failure planes.
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Feb 2023
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