I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[14784]
Open Access
Abstract: Silicified peritidal carbonates of the Tonian Draken Formation, Spitsbergen, contain highly diverse and well-preserved microfossil assemblages dominated by filamentous microbial mats, but also including diverse benthic and/or allochthonous (possibly planktonic) microorganisms. Here, we characterize eight morphospecies in focused ion beam (FIB) ultrathin sections using transmission electron microscopy (TEM) and X-ray absorption near-edge structure (XANES) spectromicroscopy. Raman and XANES spectroscopies show the highly aromatic molecular structure of preserved organic matter. Despite this apparently poor molecular preservation, nano-quartz crystallization allowed for the preservation of various ultrastructures distinguished in TEM. In some filamentous microfossils (Siphonophycus) as well as in all cyanobacterial coccoids, extracellular polysaccharide sheaths appear as bands of dispersed organic nanoparticles. Synodophycus microfossils, made up of pluricellular colonies of coccoids, contain organic walls similar to the F-layers of pleurocapsalean cyanobacteria. In some fossils, internal content occurs as particulate organic matter, forming dense networks throughout ghosts of the intracellular space (e.g., in Salome svalbardensis filaments), or scarce granules (in some Chroococcales). In some chroococcalean microfossils (Gloeodiniopsis mikros, and also possibly Polybessurus), we find layered internal contents that are more continuous than nanoparticulate bands defining the sheaths, and with a shape that can be contracted, folded, or invaginated. We interpret these internal layers as the remains of cell envelope substructures and/or photosynthetic membranes thickened by additional cellular material. Some Myxococccoides show a thick (up to ~ 0.9 μm) wall ultrastructure displaying organic pillars that is best reconciled with a eukaryotic affinity. Finally, a large spheroid with ruptured wall, of uncertain affinity, displays a bi-layered envelope. Altogether, our nanoscale investigations provide unprecedented insights into the taphonomy and taxonomy of this well-preserved assemblage, which can help to assess the nature of organic microstructures in older rocks.
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Nov 2024
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I24-Microfocus Macromolecular Crystallography
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Diamond Proposal Number(s):
[31420]
Open Access
Abstract: In-falling cosmic dust has left evidence of meteoritic polymer amide in stromatolites, both fossil and modern. In search of evidence for continued present day in-fall, sea foam was collected from two beaches in Rhode Island and subjected to Folch extraction to concentrate amphiphilic components in a chloroform water–methanol interphase layer. Hemoglycin polymer amide molecules previously characterized by MALDI mass spectrometry in meteorites and stromatolites were identified in sea foam either directly, or via their fragmentation patterns. Residual isotope enrichment pointed to an extra-terrestrial origin. The unique resiliency of sea foam may be due to the formation of extended hemoglycin lattices that stabilize its closed-cell structure and its lightness can potentially be explained by photolytic hydrogen production.
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Nov 2024
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Open Access
Abstract: In shallow lakes, mobilization of legacy phosphorus (P) from the sediments can be the main cause for persisting eutrophication after reduction of external P input. In-lake remediation measures can be applied to reduce internal P loading and to achieve ecosystem recovery. The eutrophic shallow peat lake Terra Nova (The Netherlands) was treated with iron (Fe) to enhance P retention in the sediment. This treatment, however, intensified seasonal internal P loading. An earlier study suggested that Fe addition led to increased P binding by easily-reducible Fe(III) associated with organic matter (OM), which readily releases P when bottom waters turn hypoxic. In this complementary study, bulk and micro Fe K-edge and P K-edge X-ray absorption spectroscopy and micro-focused X-ray fluorescence spectroscopy were applied to characterize the P hosting Fe(III) pool. Combined with sequential extraction data, the synchrotron X-ray analyses revealed that a continuum of co-precipitates of Fe(III) with calcium, phosphate, manganese and organic carbon within the OM matrix constitutes the reducible Fe(III) pool. The complementary analyses also shed new light on the interpretation of sequential extraction results, demonstrating that pyrite was not quantitatively extracted by nitric acid (HNO3) and that most of the Fe(II) extracted by hydrochloric acid (HCl) originated from phyllosilicate minerals. Formation of an amorphous inorganic–organic co-precipitate upon Fe addition constitutes an effective P sink in the studied peaty sediments. However, the high intrinsic reactivity of this nanoscale co-precipitate and its fine distribution in the OM matrix makes it very susceptible to reductive dissolution, leading to P remobilization under reducing conditions.
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Nov 2024
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Krios II-Titan Krios II at Diamond
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Diamond Proposal Number(s):
[33808]
Open Access
Abstract: Inorganic minerals that form via regulated biological processes exhibit remarkable properties. This is due to the involvement of macromolecules that control biomineralization. Even though the interactions of these biopolymers with solid mineral phases are intensely studied, not much is known about their involvement in the preceding steps of intracellular transport of the mineral building blocks. In this work, the model system of coccolith calcite crystallization is utilized to address the role of mineral-associated polysaccharides in the transport of calcium ions. State-of-the-art cryo-electron tomography is used to image in situ ion-rich dense phases in the wild-type and in two mutant strains, defected in coccolith production. The results show that the abundance and solubility of the calcium-rich condensates need to be finely tuned for proper crystallization. When the native macromolecular assemblage is compromised, calcium is still present in the calcifying fluid as a solute, but this is not sufficient for coccolith development. These results suggest that biomineralizing systems achieve superior regulation of crystallization due to the use of dense macromolecule-rich phases.
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Nov 2024
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I13-2-Diamond Manchester Imaging
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Manfredo
Capriolo
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Sara
Callegaro
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Frances. M.
Deegan
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Renaud
Merle
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Heejin
Jeon
,
Martin. J.
Whitehouse
,
László. E
Aradi
,
Malte
Storm
,
Paul R.
Renne
,
Don R.
Baker
,
Jacopo
Dal Corso
,
Robert J.
Newton
,
Csaba
Szabo
,
Bruna B.
Carvalho
,
Nasrrddine
Youbi
,
Andrea
Marzoli
Diamond Proposal Number(s):
[24552]
Open Access
Abstract: The nature of the magma plumbing system of Large Igneous Provinces is still poorly understood. Among these exceptional magmatic events from Earth’s past, the end-Triassic Central Atlantic Magmatic Province (CAMP) and the end-Cretaceous Deccan Traps (Deccan) coincided in time with two of the most catastrophic biotic crises during the Phanerozoic. In order to constrain the architecture of their magma plumbing system, glomerocrysts containing abundant bubble-bearing melt inclusions from basaltic lava flows of both CAMP and Deccan were investigated via in situ geochemical and microstructural analyses. The analysed glomerocrysts, dominated by augitic clinopyroxene crystals, represent fragments of a crystal mush entrained by basaltic magmas before eruption. The analysed melt inclusions, consisting of an intermediate to felsic composition glass and CO2-bearing bubbles, represent relics of interstitial melts and fluids within a porous crystal framework forming the crystal mush. The different volume proportions between bubbles and whole inclusions reveal that melt entrapment occurred after volatile exsolution. The minimum observed bubble/inclusion fraction indicates that the CO2 concentration in CAMP and Deccan melts was at least 0.3 wt.%, consistent with a maximum entrapment pressure of about 0.5 GPa at CO2–H2O fluid-saturated conditions. The MgO-rich composition of host clinopyroxene crystals and whole rocks is in contrast with the SiO2-rich composition of (trachy-) andesitic to rhyolitic glass of melt inclusions, pointing to disequilibrium conditions. Thermodynamic and geochemical modelling shows that fractional crystallization alone cannot explain the evolved composition of glass in melt inclusions starting from their whole rock composition. On one side, the oxygen isotope composition of clinopyroxene crystals in glomerocrysts ranges from + 3.9 (± 0.3) to + 5.8 (± 0.3) ‰ and their sample-averaged oxygen isotope composition spans from + 4.4 (N = 10) to + 5.6 (N = 10) ‰, implying that glomerocrysts crystallized from mafic melts with normal (i.e., mantle-like) to slightly low δ18O values. On the other side, the oxygen isotope composition of glass in melt inclusions ranges from + 5.5 (± 0.4) to + 22.1 (± 0.4) ‰, implying that melt inclusions entrapped intermediate to felsic melts with normal (i.e., mantle-like) to extremely high δ18O values, typical of (meta-) sedimentary rocks. Some melt inclusions are compatible with fractionation from the same mafic melts that crystallized their host mineral phase, but most melt inclusions are compatible with variable degrees of crustal assimilation and partial mixing, potentially followed by minor post-entrapment isotope re-equilibration. In the CAMP, where sedimentary basins are abundant, (meta-) pelites and occasionally granitoids were the most likely assimilants. On the contrary, in the Deccan, where sedimentary basins are rare, granitoids and metapelites were the most likely assimilants. Oxygen isotope compositions of glass in melt inclusions, spanning from mantle-like to crust-dominated signatures, suggest that the CO2 within their coexisting bubbles likely derived partly from the mantle and partly from assimilated crustal materials. The investigated glomerocrysts and their bubble-bearing melt inclusions are relics of a multiphase (i.e., solid + liquid + gas phases) crystal mush revealing a dynamic evolution for the magma plumbing system of both CAMP and Deccan, where crystals, silicate melts and exsolved fluids coexisted and interacted through most of the transcrustal section.
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Oct 2024
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B22-Multimode InfraRed imaging And Microspectroscopy
I24-Microfocus Macromolecular Crystallography
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Diamond Proposal Number(s):
[31420, 32898, 37199]
Open Access
Abstract: Hemoglycin, a space polymer of glycine and iron, has been identified in the carbonaceous chondritic meteorites Allende, Acfer 086, Kaba, Sutter's Mill and Orgueil. Its core form has a mass of 1494 Da and is basically an antiparallel pair of polyglycine strands linked at each end by an iron atom. The polymer forms two- and three- dimensional lattices with an inter-vertex distance of 4.9 nm. Here the extraction technique for meteorites is applied to a 2.1 Gya fossil stromatolite to reveal the presence of hemoglycin by mass spectrometry. Intact ooids from a recent (3000 Ya) stromatolite exhibited the same visible hemoglycin fluorescence in response to x-rays as an intact crystal from the Orgueil meteorite. X-ray analysis confirmed the existence in ooids of an internal three-dimensional lattice of 4.9 nm inter-vertex spacing, matching the spacing of lattices in meteoritic crystals. FTIR measurements of acid-treated ooid and a Sutter's Mill meteoritic crystal both show the presence, via the splitting of the Amide I band, of an extended anti-parallel beta sheet structure. It seems probable that the copious in-fall of carbonaceous meteoritic material, from Archaean times onward, has left traces of hemoglycin in sedimentary carbonates and potentially has influenced ooid formation.
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Oct 2024
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DIAD-Dual Imaging and Diffraction Beamline
I11-High Resolution Powder Diffraction
I12-JEEP: Joint Engineering, Environmental and Processing
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Open Access
Abstract: The plumes of Enceladus contain a non-ice component that originates from aqueous processes occurring within the interior 1,2. The ocean of Enceladus is thought to be connected to the surface across a range of time scales. These processes range from the rapid eruption of cryovolcanic plumes to slow crustal convection on geological timescales3,4. In every case, the system will have a temperature and geochemical evolution as it freezes, with the history of evolution recorded in the sequence of mineral precipitation. Analogously to igneous and metamorphic petrology, we can explore the mineralogy and its context to reconstruct the history of that sample. Most importantly, for astrobiological investigations, the formation and cryo-petrological study of inorganic salts can be used to identify sites of recent exposure on the surface.
Synchrotron X-ray techniques allow fast, high-resolution probing of these systems with X-ray light. By exploring large, multi-component samples with multiple techniques, with variable temperature over time we can reveal many emergent processes that may not be predictable with simple phase diagrams.
We use a combination of synchrotron powder X-ray diffraction (PXRD) and X-ray microtomography (µCT) across multiple beamlines at Diamond Light Source (I11, I12 and DIAD). Using a multi-modal approach, we present an in-situ study of the low-temperature phase behaviour of Na-Cl-HCO3 fluids. We employ K11-DIAD (Dual Imaging and Diffraction) to carry out ‘image-guided diffraction’ on an Enceladus-type sample frozen in real-time. DIAD’s unique capabilities allow us not only to study microstructure down to 1 µm but also to carry out spatially resolved XRD and identify solid phases present.
We present, for the first time, the use of dual imaging and diffraction of a Na-Cl-CO₃ solution frozen in real time in 3 dimensions [Figure 1]. DIAD’s imaged guided diffraction provides spatially-resolved XRD, allowing us to probe different regions of our sample and identify the formation of Na2CO₃ hydrates. We show the influence of carbonate chemistry on the sequence of cryogenic precipitation and the development of complex microstructures. These results provide insights into crustal transport processes and will help with interpreting observational data from upcoming Galilean missions.
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Sep 2024
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[30455]
Open Access
Abstract: Permeability is a key rock property important for scientific applications that require simulation of fluid flow. Although permeability is determined using core flooding experiments, recent advancements in micro-CT imaging and pore scale fluid flow simulations have made it possible to constrain permeability honoring pore scale rock structure. Previous studies have reported that complex association of pores and solid grains often results in preferential flow paths which influence the resulting velocity field and, hence, the upscaled permeability value. Additionally, the pore structure may change due to geochemical processes such as microbial growth, mineral precipitation and dissolution. This could result in a flow field which dynamically evolves spatially and temporally. It would require numerous experiments or full physics simulations to determine the resultant upscaled Darcy permeability for such dynamically changing systems. This study presents a graph theory-based approach to upscale permeability from pore-to-Darcy scale for changing pore structure. The method involves transforming a given micro-CT rock image to a graph network map followed by the identification of the least resistance path between the inlet and the outlet faces using Dijkstra's algorithm where resistance is quantified as a function of pore sizes. The least resistance path is equivalent to the path of lowest resistance within the domain. The method was tested on micro-CT images of the samples of Sherwood Sandstone, Ketton Limestone and Estaillades Limestone. The three micro-CT images were used to generate 30 synthetic scenarios for geochemically induced pore structure changes covering a range of pore and solid grain growth. The least resistance value obtained from Dijkstra's algorithm was observed to correlate with upscaled permeability value determined from full physics simulations, while improving computational efficiency by a factor of 250. This provides confidence in using graph theory method as a proxy for full physics simulations for determining effective permeability for samples with changing pore structure.
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Sep 2024
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Abstract: Mangroves provide fundamental ecosystem services; however, the growing impact of human activities has resulted in increased pollution pressure, such as chemical contaminants. The redox processes are major biogeochemical players in the fate of contaminants. We investigate the effects of the redox environment on As(V) and Cr(VI) adsorbed on goethite (i.e., Fe(III)-oxide) over 40 days of incubation in columns containing mangrove soil subjected to seawater saturation cycles. Our spectroscopic data highlighted a less Fe(III)-ordered arrangement on goethite over time; As(V) is strongly bound to goethite, which delayed until 20 days its remobilization and reduction to As(III). After 40 days, the goethite held ∼50% of the initial As, but it was 15% as As(III). On the other hand, Cr(VI) was desorbed almost completely in less than 10 days, and the residual Cr ions bound to goethite were almost totally converted to Cr(III). Our study stresses the importance of individual time-dependence in evaluating chemical speciation changes among potential toxic elements in wetland systems, such as mangroves and artificial wetlands designed to water treatment or soil remediation.
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Sep 2024
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B18-Core EXAFS
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Diamond Proposal Number(s):
[31395]
Open Access
Abstract: The significant abundance of uranium in radioactive waste inventories worldwide necessitates a thorough understanding of its behavior. In this work, the speciation of uranyl(VI), (UO22+) in a gibbsite system under ambient conditions has been determined as a function of pH by deconvolution and analysis of luminescence spectroscopic data. Uniquely, a combined experimental and statistical approach utilizing time-resolved luminescence spectroscopy and parallel factor analysis (PARAFAC) of excitation emission matrices has been successfully utilized to identify four separate luminescent U(VI) species in the uranyl-gibbsite system for the first time. The speciation of all luminescent U(VI) species in an environmentally relevant system over a pH range of 6–11 is discerned through the analysis of emission fingerprints at low temperature (20 K). Comparison of the deconvoluted luminescence spectra with mineral standards and geochemical models of the system allows the assignment of the luminescent chemical species as metaschoepite, Na-compreignacite, surface adsorbed ≡AlO2–UO2(OH) and ≡AlO2–UO2(CO3)24– complexes, with assignments supported by fitting of extended X-ray absorption fine structure data. The combined spectroscopic techniques in this study show that assignment and quantification of uranyl(VI) species in a sorption system over a large pH range can be accurately achieved using PARAFAC to deconvolute a three way emission spectroscopic data set.
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Sep 2024
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