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Maurizio
Toft
,
Maëva
Meynier
,
Hélène Lubrano
Di Scampamorte
,
Cedric
Vallee
,
Miguel
Salinas
,
Peijun
Zhang
,
Jessica
Tacco
,
Anne-Sophie
Gay
,
Emmanuel
Bourinet
,
Eric
Lingueglia
,
Emmanuel
Deval
Open Access
Abstract: Acid-sensing ion channels (ASICs) are members of the DEG/ENaC family that includes the only known peptide-gated ion channels. While ASICs are gated by protons, they are also sensitive to peptides and are modulated by the molluscan FMRFamide and other mammalian neuropeptides ending by the RFamide motif. We identified a set of synthetic short amidated hexapeptides, which not only end by the RFamide motif but also by CFamide and FCamide, as potent positive modulators of ASIC3 acid-induced activity. We focused on two of them, a RFamide peptide (FR RFamide) and a CFamide peptide (FR Famide), demonstrating that they have similar specificity for and effects on ASIC3. The potentiating effects of the two peptides are due to a strong slow-down of desensitization, leading to an increase in the amount of current induced by acid pH (≤pH6.6), with apparent affinities ranging from 1 to 5 μM. Surprisingly, the washout kinetic of FR RFamide peptide was much slower than those of FR Famide and other known RFamide peptides, suggesting potential differences in their mechanisms of action. Computational modeling and structure-function analysis reveal interactions of both peptides with the non-proton binding site of ASIC3 as already reported before for other RFamide peptides, but our data also suggest possible additional effects of FR RFamide involving directly or indirectly the proton binding domain. These findings expand our understanding of ASICs’ modulation by peptides, identifying novel short modulators of ASIC3, including peptides with new CFamide and FCamide ending motifs, and showing differences between these peptides using their washout kinetic as a new parameter.
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Dec 2025
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I03-Macromolecular Crystallography
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Diamond Proposal Number(s):
[37045]
Open Access
Abstract: Objective: To determine the high-resolution structure of human Copper-Zinc superoxide dismutase (hSOD1), an antioxidant enzyme whose mutations cause amyotrophic lateral sclerosis (ALS), under near-physiological conditions. Because SOD1 is intrinsically dynamic, capturing its structure at ambient temperature is key to understanding how temperature modulates its conformational flexibility, ensemble and functional states relevant to both catalysis and disease.
Materials and Methods: Recombinant hSOD1 was expressed in E. coli, purified by affinity and size-exclusion chromatography, and crystallized at ambient temperature. Serial synchrotron crystallography (SSX) data were collected at 293 K at the EMBL P14-2 Time-Resolved Experiments with Crystallography (T-REXX) beamline at PETRA III, and compared with a 100 K cryogenic at the Diamond Light Source beamline (I03). Both datasets were processed and refined using CCP4 suite and PHENIX packages. B-factor distributions, per-residue RMSD values, and conformational differences were analyzed to quantify temperature-dependent effects.
Results: The ambient-temperature SOD1SSX structure was determined at 2.3 Å resolution (PDB ID:9XJ0 this work) and closely matched its 2.37 Å cryogenic counterpart (SOD1CRYO, PDB ID:9XJI this work), both obtained from identical crystallization conditions in the hexagonal P6₃ space group. Cryocooling caused a 3.8% contraction in unit-cell volume, consistent with lattice densification and a 5.2% reduction in molecular surface volume. Despite the overall similarities, the ambient-temperature model revealed localized conformational differences in solvent-exposed loop residues, particularly Ser25-Asn26, Leu67-Glu77, Ile99, and the Asp109-His110-Cys111 triad, and a distinct side-chain orientation of Asn53 was observed at the dimerization interface. While the β-barrel core remained rigid, these regions correspond to redox- and metal-responsive sites implicated in aggregation/fiber formation and putative drug binding.
Conclusions: Temperature perturbs local dynamics in SOD1 structure without altering its native dimeric form. The ambient-temperature model reveals flexible, chemically accessible regions that act as druggable hotspots and coincide with ALS-linked mutation sites driving misfolding and aggregation. Considering temperature effects is crucial for structure-based drug design, ensuring candidate molecules engage physiologically relevant conformations. This structure lays the groundwork for future time-resolved crystallography of SOD1 folding and ligand interactions.
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Dec 2025
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I18-Microfocus Spectroscopy
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Rémi
Kinet
,
Joanna
Sikora
,
Marie-Laure
Arotcarena
,
Melina
Decourt
,
Eric
Balado
,
Evelyne
Doudnikoff
,
Sylvain
Bohic
,
Marta
Vesnaver
,
Anna
Lovisotto
,
Marie-Laure
Thiolat
,
Nathalie
Dutheil
,
Claire
Mazzocco
,
Karim
Harhouri
,
Rémy
Steinschneider
,
Severine
Menoret
,
Laurent
Tesson
,
Ignacio
Anegon
,
Michele
Morari
,
Miquel
Vila
,
François
Georges
,
Erwan
Bezard
,
Pierre-Olivier
Fernagut
,
Benjamin
Dehay
Diamond Proposal Number(s):
[29838]
Open Access
Abstract: Mutations in the ATP13A2 gene were identified as the cause of Kufor-Rakeb syndrome (KRS), a juvenile-onset form of Parkinson’s disease (PD). Developing relevant and predictive models for the rare PD forms is necessary to understand the pathological mechanisms and validate therapeutic strategies. Herein, we aimed to comprehensively characterize the first transgenic Atp13a2 knockout rat model. Behavioral assessment demonstrated specific developmental deficits in animals with deletion of Atp13a2. Further analysis revealed that Atp13a2 knockout rats displayed age-dependent fine motor skills deficits and impaired locomotor habituation similar to those observed in PD patients at the early stage of motor symptoms. In contrast, no change in the nigrostriatal integrity was observed. An extended investigation on heavy metals homeostasis, autophagy-related markers, and lipofuscin accumulation showed significant changes reminiscent of KRS. Finally, we tested whether inducing pathology by viral-mediated overexpression of human α-synuclein or human tyrosinase exacerbated the onset or extent of pathological changes. This Atp13a2 KO rat model could help better understand autophagy in PD pathogenesis and open new therapeutic validation opportunities.
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Nov 2025
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I06-Nanoscience (XPEEM)
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Gregg
Wildenberg
,
Kevin M.
Boergens
,
Lola
Lambert
,
Ruiyu
Li
,
Allison
Craig
,
Michael K. L.
Man
,
Amin
Moradi
,
Janek
Rieger
,
Hengli
Duan
,
Sarnjeet S.
Dhesi
,
Gabriel
Karras
,
Francesco
Maccherozzi
,
Keshav
Dani
,
Rudolf
Tromp
,
Sense Jan
Van Der Molen
,
Sarah B.
King
,
Narayanan
Kasthuri
Diamond Proposal Number(s):
[40333]
Open Access
Abstract: Photoemission electron microscopy (PEEM) offers a potential third modality for large-volume connectomics alongside transmission electron microscopy (TEM) and scanning electron microscopy (SEM). We image osmium stained, ultrathin brain sections on gold coated silicon at synaptic resolution using commercial PEEMs. At coarser resolution, we demonstrate that ultraviolet laser illumination enables gigavoxel-per-second acquisition rates without thermal damage. PEEM combines TEM-like parallel detection with SEM-compatible solid supports into a potentially scalable and cost-effective approach for large-volume connectomes.
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Nov 2025
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I04-Macromolecular Crystallography
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Diamond Proposal Number(s):
[39148]
Open Access
Abstract: Frataxin is a 23 kDa mitochondrial iron-binding protein involved in the biogenesis of iron–sulfur (Fe–S) clusters. Deficiency in frataxin is associated with Friedreich's ataxia, a progressive neurodegenerative disorder. CyaY, the bacterial ortholog of eukaryotic frataxin, is believed to function as an iron donor in Fe–S cluster assembly, making it a key target for structural and functional studies. In this work, a comprehensive structural analysis of the Escherichia coli CyaY protein is presented, comparing its structure at room temperature and cryogenic conditions. Notably, the first room-temperature structures are obtained using the Turkish Light Source “Turkish DeLight” X-ray diffractometer and serial synchrotron X-ray crystallography, marking a significant step forward in understanding CyaY under near-physiological conditions.
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Oct 2025
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I24-Microfocus Macromolecular Crystallography
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Sandra
Codonya
,
Beatrice
Jora
,
Miriam
Santos-Caballero
,
Qiongju
Qiu
,
Carla
Calvó-Tusell
,
Celia
Escriche
,
Andreea L.
Turcu
,
Filippo
Prischi
,
Clara
Bartra
,
Cristina
Val
,
Christophe
Morisseau
,
Belén
Pérez
,
Andrea
Bertran-Mostazo
,
Sílvia
Osuna
,
Rubén
Corpas
,
Christian
Griñán-Ferré
,
Carles
Galdeano
,
M. Isabel
Loza
,
Mercè
Pallàs
,
Coral
Sanfeliu
,
Bruce D.
Hammock
,
José
Brea
,
Ferran
Feixas
,
Maria R.
Conte
,
Enrique J.
Cobos
,
Santiago
Vázquez
Diamond Proposal Number(s):
[32787]
Open Access
Abstract: The soluble epoxide hydrolase (sEH) has recently emerged as a promising target for the treatment of several pain-related conditions. Herein, we report the design and synthesis of a peripherally restricted sEH inhibitor with high potency and good Drug Metabolism and Pharmacokinetics (DMPK) properties. Molecular dynamics and X-ray crystallography helped reveal the binding of these inhibitors to sEH. The selected compound showed a robust analgesic effect in a dose-dependent manner in a murine model of chemotherapy-induced neuropathic pain (CINP). Moreover, the compound also prevented the development of paclitaxel-induced neuropathic pain. Overall, these results suggest that peripheral inhibition of sEH might constitute a novel therapy to prevent and treat CINP.
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Oct 2025
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I14-Hard X-ray Nanoprobe
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Gaewyn
Ellison
,
Rhiannon E.
Boseley
,
Meg
Willans
,
Sarah
Williams
,
Evelyn S.
Innes
,
Paige
Barnard
,
Julia
Koehn
,
Somayra S. A.
Mamsa
,
Paul
Quinn
,
Daryl L.
Howard
,
Simon A.
James
,
Mark J.
Hackett
Diamond Proposal Number(s):
[34101]
Open Access
Abstract: Understanding the role of metal ions in normal and abnormal cell function continues to emerge as a critical research area in the biological and biochemical sciences. This is especially true in the context of brain health and neurodegenerative diseases, as the brain is especially enriched in metal ions. A range of microscopy and bioanalytical techniques are available to assist in characterizing and observing changes to the brain metallome. As is the case in many other scientific fields, the integration of multiple analytical methods often yields a more complete chemical picture and deeper biological understanding. Herein, we present a case study applying 4 different analytical methods to provide spatially resolved characterization of chemical and biochemical parameters relating to the iron (Fe) metallome within a specific brain region, cornu ammonis sector 1 (CA1) of the hippocampus. The CA1 hippocampal sector was chosen for investigation due to its known endogenous enrichment in Fe and its selective vulnerability to neurodegeneration. The 4 analytical techniques applied were X-ray fluorescence microscopy (to quantify Fe distribution); X-ray absorption near-edge structure (XANES) spectroscopy to reveal information on Fe oxidation state and coordination environment; immuno-fluorescence to reveal relative abundance of Fe storage proteins (heavy chain ferritin and mitochondrial ferritin); and spatial transcriptomics to reveal gene expression pathways relevant to Fe homeostasis. Collectively, the results highlight that although pyramidal neurons in lateral and medial regions of the hippocampal CA1 sector are morphologically similar, key differences in the Fe metallome are evident. The observed differences within the hippocampal CA1 sector potentially indicate a higher oxidative environment and higher metabolic turnover in medial CA1 neurons relative to lateral CA1 neurons, which may account for the heightened vulnerability to neurodegeneration that is observed in the medial CA1 sector.
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Oct 2025
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Open Access
Abstract: Since the first paper published by Susan Cole in 1990 detailing multidrug resistance mediated by ABCC1/MRP1, research into the C-subfamily of ATP-binding cassette transporters has continued to uncover a wide range of functionally divergent proteins. However, several orphan transporters remain in the C-subfamily, and the physiological function and substrates of ABCC5, ABCC11, and ABCC12 remain elusive. This review explores the emerging understanding of human ABCC5. Unlike other ABC transporters with well-defined drug export functions, ABCC5’s physiological roles remain only partially understood. While it is known for its involvement in multidrug resistance in cancers, recent studies suggest broader implications in development, metabolism, neurobiology, and male fertility. ABCC5 exports various endogenous substrates, including cyclic nucleotides (cAMP and cGMP), glutamate conjugates like NAAG, and possibly haem. Knockout models in mice, zebrafish, and sea urchins reveal ABCC5’s role in gut formation, brain function, eye development, and iron metabolism. In mice, its deletion results in lower adipose tissue mass, enhanced insulin sensitivity, and neurobehavioral changes resembling schizophrenia, highlighting its role in glutamatergic signalling and circadian regulation. Functionally, ABCC5 appears to impact adipocyte differentiation and GLP-1 release, implicating it in type 2 diabetes susceptibility in humans. Structural studies using human ABCC5 revealed a novel autoinhibitory mechanism involving a peptide segment (C46–S64) that blocks substrate binding, offering new potential for selective inhibitor development. However, this review emphasises caution in targeting ABCC5 for cancer therapy due to its underappreciated physiological function(s), particularly in the brain and male reproductive system. Understanding ABCC5’s substrate specificity, regulatory mechanisms, and functional redundancy with its paralog ABCC12 remains critical for successful therapeutic strategies in humans.
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Sep 2025
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I03-Macromolecular Crystallography
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Abstract: The precise wiring of the nervous system depends on axon guidance molecules and how axons navigate to their synaptic targets. In this thesis, we unveil novel regulatory mechanisms of semaphorins, the largest group of guidance cues, and their plexin receptors through two distinct approaches. First, we investigate how extracellular matrix components, proteoglycans, modulate semaphorin-plexin signaling. Second, we examine the downstream effector MICAL1 regulatory mechanisms controlling cytoskeletal responses to semaphorin-plexin signaling.
Through functional assays with drosophila secreted semaphorins and structural analysis of Sema2b, we discovered that proteoglycans interact with these guidance molecules through their glycosaminoglycan (GAG) chains. This led to our proposed semaphorin bridge model, where GAG chains of proteoglycans tether secreted semaphorins to cell surfaces, presenting them to their receptors on passing axons. This interaction with GAGs prevents semaphorin diffusion and establishes semaphorin concentration gradients, enabling these molecules to function as short- range guidance cues. We employed cryo-electron microscopy and biochemical approaches to elucidate the structure of MICAL1 and uncover an autoinhibitory mechanism wherein the N- terminal catalytic domain engages with the C-terminal coiled-coil domain to prevent F-actin depolymerization. We found that one helix of the CC domain (CCα1) binding site on the MO domain overlaps with the F-actin binding site, suggesting that steric interference from MO-CCα1 interactions maintains MICAL1 in an inactive state by preventing F-actin engagement.
These findings provide important insights into the regulation of axon guidance and could lead to the development of new therapeutic molecules for biomedical research.
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Sep 2025
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B21-High Throughput SAXS
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Diamond Proposal Number(s):
[28516]
Abstract: Mutations in the E3 ubiquitin ligase Parkin gene have been linked to early onset Parkinson’s disease. Besides many other roles, Parkin is involved in clearance of damaged mitochondria via mitophagy—a process of particular importance in dopaminergic neurons. Upon mitochondrial damage, Parkin accumulates at the outer mitochondrial membrane and is activated, leading to ubiquitination of many mitochondrial substrates and recruitment of mitophagy effectors. While the activation mechanisms of autoinhibited Parkin have been extensively studied, it remains unknown how Parkin recognizes its substrates for ubiquitination. Here, we characterize a conserved region in the flexible linker between the Ubl and RING0 domains of Parkin, which is indispensable for Parkin interaction with the mitochondrial GTPase Miro1. Our results may explain fast kinetics of Miro1 ubiquitination by Parkin in recombinant assays and provide a biochemical explanation for Miro1-dependent Parkin recruitment to the mitochondrial membrane observed in cells. Our findings are important for understanding mitochondrial homeostasis and may inspire new therapeutic avenues for Parkinson’s disease.
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Aug 2025
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