I14-Hard X-ray Nanoprobe
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Diamond Proposal Number(s):
[36126]
Open Access
Abstract: Coal fly ash (CFA), a metal-rich byproduct of coal combustion is produced in vast quantities and poses significant ecological risks. CFA also contains abundant technologically relevant metal oxides and trace metals, including rare earth elements (REE), often at higher concentrations than in primary ores. This makes sustainable recovery strategies a major industrial opportunity. Here, green solvent systems were applied to leach metals from CFA, and the resulting leachates were added to cultures of Magnetospirillum gryphiswaldense (MSR1), a model magnetotactic bacterium that biomineralizes iron into membrane-bound magnetic nanoparticles (magnetosomes) and is capable of interacting with non-iron metals through adsorption and biomineralization. Eleven green solvents, including deep eutectic solvents (DES), were tested for extraction efficiency, with six showing performance comparable to a mineral acid control. Copper (Cu) emerged as the primary toxicant to MSR1, prompting selective precipitation with potassium ferrocyanide trihydrate (PFCT) to reduce its concentration. Cu-depleted lactic acid-based leachates supported MSR1 growth and magnetosome formation even without supplemented iron. Nano-XRF and ICP-MS analysis revealed MSR1 interacts with CFA-derived metals, most significantly showing that produced CFA magnetosomes contained a 5.3–6.1-fold increase in Cu compared to controls. As Cu is both a growth inhibitor and a target pollutant, these findings suggest MSR1 may bioaccumulate Cu within magnetosomes as a detoxification strategy. Overall, this study demonstrates a combined chemical–biological route for CFA valorisation, enabling recovery of diverse metals from waste while producing magnetosomes with distinct compositions.
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Mar 2026
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DIAD-Dual Imaging and Diffraction Beamline
I14-Hard X-ray Nanoprobe
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Abstract: High-resolution characterisation of biomaterials across multiple length scales to investigate their effect on (re)mineralisation can inform the development of effective interventions for clinical conditions such as dental caries, a disease with an estimated global economic burden of approximately $245 billion. This thesis presents a multi-modal, synchrotron-based approach on novel instruments to study the role of self-assembling peptide P11-4 in dental enamel (re)mineralisation, with the aim of elucidating its mechanism of action for potential optimisation to treat early caries lesions non-invasively, and to use P11-4 as a model system for the development of a liquid flow cell that can be used to characterise biomimetic materials in situ using synchrotron X-ray diffraction (XRD) and X-ray microtomography (XMT).
X-ray fluorescence combined with differential phase contrast imaging on the I14 beamline, together with XRD and XMT on the Dual Imaging and Diffraction beamline at Diamond Light Source, along with complementary laboratory-based techniques, were employed to characterise P11-4.
P11-4 accelerated the initial kinetics of the mineralisation process compared to the control, via the provision of calcium-binding sites, and controlled the mineral deposition process, mimicking the role of enamel matrix proteins during biomineralisation. The chemical model used for artificial demineralisation to create caries-like lesions resulted in preferential demineralisation of the enamel prisms. Within the caries-like lesions, the developed flow cell demonstrated that P11-4 promoted deep remineralisation of the lesion via the gradual formation of organised apatite structures within one specific population of crystallites, likely corresponding to the prisms. The organisation of crystallites within the regenerated structure is comparable to healthy enamel, highlighting its role in restoring the organised structure lost due to caries, and its significance as a non-invasive clinical treatment.
The methodology presented in this thesis can be applied to analyse lesions and characterise other biomaterials/proteins, and the flow cell is available to other users.
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Feb 2026
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B18-Core EXAFS
I18-Microfocus Spectroscopy
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Swaroop
Chakraborty
,
Iuliia
Mikulska
,
Pankti
Dhumal
,
Nathan
Langford
,
Susan
Nehzati
,
Rhiannon
Boseley
,
Sang
Pham
,
Christian
Pfrang
,
Manpreet
Kaur
,
Eugenia
Valsami-Jones
,
Konstantin
Ignatyev
,
Dhruv
Menon
,
Superb K.
Misra
,
Iseult
Lynch
Diamond Proposal Number(s):
[33674, 35117, 35776, 40080, 40942]
Open Access
Abstract: Metal–organic frameworks (MOFs) hold immense potential for applications from separations to catalysis, yet their long-term behavior across real-world environments remains unclear. Here we introduce a hierarchical exposure framework that tracks the structural and chemical transformations in the archetypal zirconium MOF UiO-66 across sequential compartments─atmospheric gases, air, aqueous media and a biological host─and resolves how prior exposures condition or prime subsequent transformations. Using synchrotron-based spectroscopy, we find that oxidative/reactive gases leave the Zr-carboxylate nodes essentially intact, whereas exposure to environmentally relevant aqueous media initiates partial shifts in local Zr coordination and introduces oxygen into the pores─with transformation extent governed by the chemistry of the environmental matrices. Strikingly, acute exposure (24 h) to the water flea Daphnia magna drives profound framework degradation and respeciation to Zr hydroxide species. Microfocus XRF maps show that Zr is highly localized in the animal’s digestive tract, and region-specific XANES confirms uniform speciation across its tissues. Our findings establish a paradigm shifting cross-compartment transformation hierarchy in which biological processes can dominate the fate of stable MOFs even when abiotic exposures appear benign. Thus, organism-level biotransformation should be performed as a necessary part of environmental safety assessments and materials design.
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Jan 2026
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B18-Core EXAFS
I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[33674, 35117, 35776, 40942]
Open Access
Abstract: Metal–organic frameworks (MOFs) are entering water technologies on the premise that abiotic stability predicts ecological safety. We overturn this assumption by showing that UiO-66 – often regarded as chemically and structurally robust – remains intact after 7-day aging in natural borehole water yet undergoes rapid in vivo transformation in Daphnia magna. Synchrotron Microfocus X-ray absorption spectroscopy (XAS) revealed collapse of the ordered Zr–carboxylate coordination into disordered Zr–O environments within the gut; Extended X-ray Absorption Fine Structure (EXAFS) showed loss of second-shell features, and Transmission Electron Microscopy (TEM) confirmed loss of crystallinity with nanoscale aggregates appearing within 24 h of ingestion. Although acute immobilization was limited (48 h EC50 ≈ 26.5 μg mL–1), a sublethal, environmentally relevant exposure (10 μg mL–1) caused pronounced chronic effects: brood initiation was delayed by 3–5 days and cumulative reproduction decreased by ∼74% without mortality. We attribute these outcomes to gut-level transformation and associated energetic/physiological burdens, not captured by standard acute tests. These results show that abiotic stability does not necessarily imply biological inertness and highlight the need to integrate in vivo transformation pathways with chronic end points in environmental risk assessment for water-sector materials. This perspective provides a mechanistic basis to inform Safe-and-Sustainable-by-Design (SSbD) MOFs before widespread deployment in water treatment.
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Dec 2025
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I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[34311]
Abstract: Rice is a staple food for over half the world's population. This study uniquely investigates the spatial distribution of key micronutrients (Cu, Mn, Fe, Zn) in cooked brown, white, and parboiled rice using Synchrotron Micro-X-ray Fluorescence (sXRF) for the first time. Complementary analysis with Inductively Coupled Plasma Mass Spectrometry (ICP-MS) validates bulk elemental concentrations. Results from this dual-approach study reveal significantly higher micronutrient concentrations in brown rice compared to white or parboiled rice, with nutrients predominantly localised in the peripheral layers and minimal presence in the endosperm. Notably, sXRF imaging identified nutrient-rich pockets within the grain periphery, offering new perspectives on nutrient distribution beyond peripheral accumulation. Additional insights include the impact of rice section thickness (50 and 150 μm) and beam dwell times (0.5 and 30s) on sXRF sensitivity and resolution, highlighting trade-offs in detection capabilities, advancing our understanding of micronutrient localisation in cooked rice.
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Dec 2025
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I18-Microfocus Spectroscopy
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Rémi
Kinet
,
Joanna
Sikora
,
Marie-Laure
Arotcarena
,
Melina
Decourt
,
Eric
Balado
,
Evelyne
Doudnikoff
,
Sylvain
Bohic
,
Marta
Vesnaver
,
Anna
Lovisotto
,
Marie-Laure
Thiolat
,
Nathalie
Dutheil
,
Claire
Mazzocco
,
Karim
Harhouri
,
Rémy
Steinschneider
,
Severine
Menoret
,
Laurent
Tesson
,
Ignacio
Anegon
,
Michele
Morari
,
Miquel
Vila
,
François
Georges
,
Erwan
Bezard
,
Pierre-Olivier
Fernagut
,
Benjamin
Dehay
Diamond Proposal Number(s):
[29838]
Open Access
Abstract: Mutations in the ATP13A2 gene were identified as the cause of Kufor-Rakeb syndrome (KRS), a juvenile-onset form of Parkinson’s disease (PD). Developing relevant and predictive models for the rare PD forms is necessary to understand the pathological mechanisms and validate therapeutic strategies. Herein, we aimed to comprehensively characterize the first transgenic Atp13a2 knockout rat model. Behavioral assessment demonstrated specific developmental deficits in animals with deletion of Atp13a2. Further analysis revealed that Atp13a2 knockout rats displayed age-dependent fine motor skills deficits and impaired locomotor habituation similar to those observed in PD patients at the early stage of motor symptoms. In contrast, no change in the nigrostriatal integrity was observed. An extended investigation on heavy metals homeostasis, autophagy-related markers, and lipofuscin accumulation showed significant changes reminiscent of KRS. Finally, we tested whether inducing pathology by viral-mediated overexpression of human α-synuclein or human tyrosinase exacerbated the onset or extent of pathological changes. This Atp13a2 KO rat model could help better understand autophagy in PD pathogenesis and open new therapeutic validation opportunities.
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Nov 2025
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I14-Hard X-ray Nanoprobe
I22-Small angle scattering & Diffraction
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Diamond Proposal Number(s):
[19466, 26220, 22709]
Open Access
Abstract: The deposition of calcium phosphate mineral within a collagen matrix plays a pivotal role in the formation of bone and teeth, yet understanding its precise mechanism and time-dependence remains a significant challenge. Conventional approaches are often constrained to ex situ studies and as a result the intrinsic dynamics governing collagen mineralization remains unclear. To address this knowledge gap, we developed a custom thermal flow cell to enable in situ characterization using Raman spectroscopy and small/wide-angle X-ray scattering for comparable sample settings. This approach allowed us to monitor the intricate process of collagen matrix mineralization from the initial infiltration of precursor phases to the formation of intermediate phosphate phases, and ultimately to the predominant growth of hydroxyapatite. Our findings reveal a striking expansion of the collagen matrix during initial infiltration, followed by compression in the early stages of mineralization, likely driven by water expulsion, which suggests the development of pre-stress similar to that observed in bone. As mineralization progressed, the matrix expanded once again, correlated with crystal growth. Post-mortem analyses confirmed the presence of intrafibrillar mineralization, with remarkable agreement to bone formation at up to 9 h of mineralization before over-mineralization occurred. Our study further identified a tessellated mineralization pattern within the collagen matrix, a feature also seen in bone, pointing to a highly regulated physico-chemical control of the mineralization dynamics. These insights deepen our understanding of the fundamental processes governing bone mineralization with broad implications for designing advanced biomaterials.
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Oct 2025
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I18-Microfocus Spectroscopy
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Diamond Proposal Number(s):
[35162]
Open Access
Abstract: Enamel erosion alters the structural integrity of the tooth surface, which can be measured using indentation techniques. However, traditional single-load indentation methods assume homogeneity within the eroded enamel, overlooking potential stratification within the subsurface lesion. This study investigates the presence of mechanical and porosity gradients within the enamel following simulated dietary acid exposure and examines how lesion depth and structure change with continued erosion. We applied varying-load micro-indentation to human enamel subjected to citric acid challenge, revealing a distinct stratification of mechanical properties. A soft superficial layer (~1- to 2-µm thick) exhibited significantly reduced hardness and was easily removed by ultrasonication, indicating its fragility. Beneath this layer, mechanical properties stabilized despite prolonged acid exposure (~3 min), suggesting a saturation point in lesion development. Profilometric analysis confirmed that although material loss increased with erosion time, the depth of the altered subsurface zone remained constant. To explore the porosity distribution, we used a novel gold nanoparticle labeling technique coupled with synchrotron-based X-ray fluorescence imaging. Nanoparticles (~20 nm) penetrated to depths of 15 to 20 µm, aligning closely with mechanical gradients inferred from indentation measurements. These findings indicate that subsurface enamel exhibits not only mechanical stratification but also corresponding variations in porosity. Our results demonstrate the limitations of single-load indentation in characterizing erosion-affected enamel and highlight the utility of multiload approaches in detecting structural heterogeneity. The correlation between mechanical softening and increased porosity suggests that the enamel subsurfaces are differentially affected. These findings raise important implications for therapeutic intervention: should remineralization strategies shift from bulk mineral delivery to layer-specific, functionally informed repair?
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Oct 2025
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I14-Hard X-ray Nanoprobe
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Gaewyn
Ellison
,
Rhiannon E.
Boseley
,
Meg
Willans
,
Sarah
Williams
,
Evelyn S.
Innes
,
Paige
Barnard
,
Julia
Koehn
,
Somayra S. A.
Mamsa
,
Paul
Quinn
,
Daryl L.
Howard
,
Simon A.
James
,
Mark J.
Hackett
Diamond Proposal Number(s):
[34101]
Open Access
Abstract: Understanding the role of metal ions in normal and abnormal cell function continues to emerge as a critical research area in the biological and biochemical sciences. This is especially true in the context of brain health and neurodegenerative diseases, as the brain is especially enriched in metal ions. A range of microscopy and bioanalytical techniques are available to assist in characterizing and observing changes to the brain metallome. As is the case in many other scientific fields, the integration of multiple analytical methods often yields a more complete chemical picture and deeper biological understanding. Herein, we present a case study applying 4 different analytical methods to provide spatially resolved characterization of chemical and biochemical parameters relating to the iron (Fe) metallome within a specific brain region, cornu ammonis sector 1 (CA1) of the hippocampus. The CA1 hippocampal sector was chosen for investigation due to its known endogenous enrichment in Fe and its selective vulnerability to neurodegeneration. The 4 analytical techniques applied were X-ray fluorescence microscopy (to quantify Fe distribution); X-ray absorption near-edge structure (XANES) spectroscopy to reveal information on Fe oxidation state and coordination environment; immuno-fluorescence to reveal relative abundance of Fe storage proteins (heavy chain ferritin and mitochondrial ferritin); and spatial transcriptomics to reveal gene expression pathways relevant to Fe homeostasis. Collectively, the results highlight that although pyramidal neurons in lateral and medial regions of the hippocampal CA1 sector are morphologically similar, key differences in the Fe metallome are evident. The observed differences within the hippocampal CA1 sector potentially indicate a higher oxidative environment and higher metabolic turnover in medial CA1 neurons relative to lateral CA1 neurons, which may account for the heightened vulnerability to neurodegeneration that is observed in the medial CA1 sector.
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Oct 2025
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I14-Hard X-ray Nanoprobe
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Diamond Proposal Number(s):
[34794]
Abstract: Nanoscale molecular interactions between growing crystals and charged polyelectrolytes are crucial to understand the self-assembly of hierarchical organic–inorganic superstructures. Little is known about earth alkaline sulfate biominerals. Yet, a detailed understanding of bioinspired crystallization is crucial for developing general descriptors for bottom-up syntheses of complex ceramics. This study investigates biomimetic strontium sulfate (SrSO4) crystallization in the presence of poly(α-glutamic acid) using multiscale microscopy and vibrational spectroscopy. Using scanning electron microscopy, we observed doughnut-shaped spherulites with granular surface texture. Biomolecule inclusion led to pronounced peak broadening in synchrotron X-ray powder diffraction, wide-angle X-ray scattering, and Raman spectroscopy, commensurate with nanoscale domain sizes and pronounced lattice strain. Texture-like wide-angle X-ray scattering patterns and nanosized domains in transmission electron microscopy support the notion of mesocrystalline organization. Based on Z-contrast STEM imaging, intercalated organics are organized as elongated nanoclusters. Diffracting planes radiate outward from the crystal center, indicating a centrosymmetric strain field. The three-dimensional (3D) chemistry was investigated using atom probe tomography, which revealed a helical distribution of organic inclusions. This approach exemplifies how organic–inorganic templating can guide the evolution of intricate biomorphic crystal shapes. Round strontium sulfate crystals bear technological potential in the field of optoelectronics, such as IR–vis conversion materials or curved waveguides.
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Oct 2025
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