I08-Scanning X-ray Microscopy beamline (SXM)
I09-Surface and Interface Structural Analysis
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Diamond Proposal Number(s):
[1860, 20639, 22619]
Open Access
Abstract: Li3N is an excellent protective coating material for lithium electrodes with very high lithium-ion conductivity and low electronic conductivity, but the formation of stable and homogeneous coatings is technically very difficult. Here, we show that protective Li3N coatings can be simply formed by the direct reaction of electrodeposited lithium electrodes with N2 gas, whereas using battery-grade lithium foil is problematic due to the presence of a native passivation layer that hampers that reaction. The protective Li3N coating is effective at preventing lithium dendrite formation, as found from unidirectional plating and plating–stripping measurements in Li–Li cells. The Li3N coating also efficiently suppresses the parasitic reactions of polysulfides and other electrolyte species with the lithium electrode, as demonstrated by scanning transmission X-ray microscopy, X-ray photoelectron spectroscopy, and optical microscopy. The protection of the lithium electrode against corrosion by polysulfides and other electrolyte species, as well as the promotion of smooth deposits without dendrites, makes the Li3N coating highly promising for applications in lithium metal batteries, such as lithium–sulfur batteries. The present findings show that the formation of Li3N can be achieved with lithium electrodes covered by a secondary electrolyte interface layer, which proves that the in situ formation of Li3N coatings inside the batteries is attainable.
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Aug 2023
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I13-2-Diamond Manchester Imaging
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Diamond Proposal Number(s):
[28557]
Open Access
Abstract: Swelling of shale in response to interaction with water is an important consideration within subsurface energy systems. In the case of waste disposal, swelling can provide important barriers around the waste and enhance the sealing ability of rocks. For shale gas exploration purpose, however, swelling may cause wellbore instability. Therefore, a careful study of shale swelling is critical for subsurface energy related applications. Here, the swelling effects of shale were imaged at nanoscale using an advanced synchrotron Transmission X-ray Microscopy (TXM) imaging technique for the first time, with a spatial resolution down to 40.9 nm. Organic matter and clays within the analysed sample were observed to display large swelling effects which resulted in a 50% reduction in porosity. Strain maps generated using Digital Volume Correlation (DVC) show deformation and significant strain were mostly localized to between the contact boundaries of sharp brittle minerals and softer organic matter and clays. This is the first study, to our knowledge, to directly image the swelling deformation of shale at the tens of nanometer scale and provide local information on the strain evolution.
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Jul 2023
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E01-JEM ARM 200CF
I08-Scanning X-ray Microscopy beamline (SXM)
I13-2-Diamond Manchester Imaging
I14-Hard X-ray Nanoprobe
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Cyril
Besnard
,
Ali
Marie
,
Sisini
Sasidharan
,
Petr
Buček
,
Jessica M.
Walker
,
Julia E.
Parker
,
Matthew C.
Spink
,
Robert A.
Harper
,
Shashidhara
Marathe
,
Kaz
Wanelik
,
Thomas E. J.
Moxham
,
Enrico
Salvati
,
Konstantin
Ignatyev
,
Michal M.
Klosowski
,
Richard M.
Shelton
,
Gabriel
Landini
,
Alexander M.
Korsunsky
Diamond Proposal Number(s):
[27749, 30684, 30691, 31005, 29256, 23873]
Open Access
Abstract: Caries, a major global disease associated with dental enamel demineralization, remains insufficiently understood to devise effective prevention or minimally invasive treatment. Understanding the ultrastructural changes in enamel is hampered by a lack of nanoscale characterization of the chemical spatial distributions within the dental tissue. This leads to the requirement to develop techniques based on various characterization methods. The purpose of the present study is to demonstrate the strength of analytic methods using a correlative technique on a single sample of human dental enamel as a specific case study to test the accuracy of techniques to compare regions in enamel. The science of the different techniques is integrated to genuinely study the enamel. The hierarchical structures within carious tissue were mapped using the combination of focused ion beam scanning electron microscopy with synchrotron X-ray tomography. The chemical changes were studied using scanning X-ray fluorescence (XRF) and X-ray wide-angle and small-angle scattering using a beam size below 80 nm for ångström and nanometer length scales. The analysis of XRF intensity gradients revealed subtle variations of Ca intensity in carious samples in comparison with those of normal mature enamel. In addition, the pathways for enamel rod demineralization were studied using X-ray ptychography. The results show the chemical and structural modification in carious enamel with differing locations. These results reinforce the need for multi-modal approaches to nanoscale analysis in complex hierarchically structured materials to interpret the changes of materials. The approach establishes a meticulous correlative characterization platform for the analysis of biomineralized tissues at the nanoscale, which adds confidence in the interpretation of the results and time-saving imaging techniques. The protocol demonstrated here using the dental tissue sample can be applied to other samples for statistical study and the investigation of nanoscale structural changes. The information gathered from the combination of methods could not be obtained with traditional individual techniques.
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Jul 2023
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[15230, 24534, 29042, 30776]
Open Access
Abstract: The synchrotron x-ray spectromicroscopy technique Scanning Transmission X-ray Microscopy (STXM) offers a powerful means to examine the underlying biochemistry of biological systems, owing to its combined chemical sensitivity and nanoscale spatial resolution. Here we introduce and demonstrate methodology for the use of STXM to examine the biochemistry of the human brain. We then discuss how this approach can help us better understand the biochemical changes that occur during the development of degenerative brain disorders, potentially facilitating the development of new therapies for disease diagnosis and treatment.
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Jun 2023
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I08-Scanning X-ray Microscopy beamline (SXM)
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Abstract: In this thesis, the bioconversion of palladium and ruthenium solutions into valuable monometallic and bimetallic nanoparticles with highly catalytic activity is described. Bacteria can enzymatically reduce Pd(II) at the expense of an exogenous electron donor to Pd(0). The resulting nanoparticles (NPs) are immobilised in the cytoplasm, membrane and periplasm of the cells resulting in small NPs with a homogeneous size and high catalytic properties. The catalytic activity of the biogenic Pd NPs is sometimes higher than the commercial catalysts with the additional advantage of being synthesized using more economic and environmentally friendly methodologies. Previous studies have shown the ability of some bacteria to recover gold and palladium from wastes using cells of Escherichia coli and Desulfovibrio desulfuricans and have elucidated some of the main enzymes involve in the initial nucleation and formation of Pd NPs. Other studies proved the ability of bacteria to synthesize bimetallic NPs of gold and palladium and palladium and ruthenium.
In this study, cells of E. coli were used for the synthesis of bimetallic NPs of Pd/Ru. A detailed information of the structure of the bimetallic NPs was provided using a combination of spectroscopic and microscopic techniques; a “core/shell” (Ru core, Pd shell) structure was reported with a similar mechanism to that reported previously by Deplanche et al., (2012) with E. coli Pd/Au NPs. In addition, the catalytic properties of the bio-bimetallic NPs were reported for the conversion of 5-hydroxymethylfurfural (5-HMF) (a waste compound derived from the hydrolysis of starch and cellulose for obtaining biofuel) into 2,5-dimethylfuran (2,5-DMF), a valuable compound with similar properties to ethanol, with onward application as biodiesel. The ability to synthesize Pd/Ru NPs was tested using a consortium of acidophilic sulfidogenic (CAS) waste culture recovered from an unrelated biotechnology process together with a traditional sulfidogenic bacterium (D. desulfuricans). D. desulfuricans and CAS culture showed high activity for the conversion of 5-HMF into 2,5-DMF.
Finally, an external source of radio-frequency (RF) (microwave energy (MW)) was applied to resting cells (i.e. before being exposed to Pd(II) solution) of E. coli and D. desulfuricans reporting changes in the dispersity of the resulted Pd NPs compared with untreated cells. The catalytic activity of Pd-NPs on MW-pretreated cells of D. desulfuricans was tested for the hydrogenation of 2-pentyne, showing increased catalytic properties as compared to Pd-NPs on untreated cells.
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Mar 2023
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I08-Scanning X-ray Microscopy beamline (SXM)
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Open Access
Abstract: Scanning transmission X-ray microscopy (STXM) provides the imaging of biological specimens allowing the parallel collection of localized spectroscopic information by X-ray fluorescence (XRF) and/or X-ray Absorption Near Edge Spectroscopy (XANES). The complex metabolic mechanisms which can take place in biological systems can be explored by these techniques by tracing even small quantities of the chemical elements involved in the metabolic pathways. Here, we present a review of the most recent publications in the synchrotrons’ scenario where soft X-ray spectro-microscopy has been employed in life science as well as in environmental research.
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Feb 2023
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I08-Scanning X-ray Microscopy beamline (SXM)
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Christina L.
Davis
,
Ryan A.
Venturelli
,
Alexander B.
Michaud
,
Jon R.
Hawkings
,
Amanda M.
Achberger
,
Trista J.
Vick-Majors
,
Brad E.
Rosenheim
,
John E.
Dore
,
August
Steigmeyer
,
Joel D.
Barker
,
Liane G.
Benning
,
Matthew R.
Siegfried
,
John C.
Priscu
,
Brent C.
Christner
,
Carlo
Barbante
,
Mark
Bowling
,
Justin
Burnett
,
Timothy
Campbell
,
Billy
Collins
,
Cindy
Dean
,
Dennis
Duling
,
Helen A.
Fricker
,
Alan
Gagnon
,
Christopher
Gardner
,
Dar
Gibson
,
Chloe
Gustafson
,
David
Harwood
,
Jonas
Kalin
,
Kathy
Kasic
,
Ok-Sun
Kim
,
Edwin
Krula
,
Amy
Leventer
,
Wei
Li
,
W. Berry
Lyons
,
Patrick
Mcgill
,
James
Mcmanis
,
David
Mcpike
,
Anatoly
Mironov
,
Molly
Patterson
,
Graham
Roberts
,
James
Rot
,
Cathy
Trainor
,
Martyn
Tranter
,
John
Winans
,
Bob
Zook
,
Mark L.
Skidmore
Diamond Proposal Number(s):
[25828]
Open Access
Abstract: Ice streams that flow into Ross Ice Shelf are underlain by water-saturated sediments, a dynamic hydrological system, and subglacial lakes that intermittently discharge water downstream across grounding zones of West Antarctic Ice Sheet (WAIS). A 2.06 m composite sediment profile was recently recovered from Mercer Subglacial Lake, a 15 m deep water cavity beneath a 1087 m thick portion of the Mercer Ice Stream. We examined microbial abundances, used 16S rRNA gene amplicon sequencing to assess community structures, and characterized extracellular polymeric substances (EPS) associated with distinct lithologic units in the sediments. Bacterial and archaeal communities in the surficial sediments are more abundant and diverse, with significantly different compositions from those found deeper in the sediment column. The most abundant taxa are related to chemolithoautotrophs capable of oxidizing reduced nitrogen, sulfur, and iron compounds with oxygen, nitrate, or iron. Concentrations of dissolved methane and total organic carbon together with water content in the sediments are the strongest predictors of taxon and community composition. δ¹³C values for EPS (−25 to −30‰) are consistent with the primary source of carbon for biosynthesis originating from legacy marine organic matter. Comparison of communities to those in lake sediments under an adjacent ice stream (Whillans Subglacial Lake) and near its grounding zone provide seminal evidence for a subglacial metacommunity that is biogeochemically and evolutionarily linked through ice sheet dynamics and the transport of microbes, water, and sediments beneath WAIS.
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Jan 2023
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[26072]
Open Access
Abstract: Pseudanabaena dominates cyanobacterial blooms in the First-Generation Magnox Storage Pond (FGMSP) at a UK nuclear site. The fission product Cs is a radiologically significant radionuclide in the pond, and understanding the interactions between Cs and Pseudanabaena spp. is therefore important for determining facility management strategies, as well as improving understanding of microbiological responses to this non-essential chemical analogue of K. This study evaluated the fate of Cs following interactions with Pseudanabaena catenata, a laboratory strain most closely related to that dominating FGMSP blooms. Experiments showed that Cs (1 mM) exposure did not affect the growth of P. catenata, while a high concentration of K (5 mM) caused a significant reduction in cell yield. Scanning transmission X-ray microscopy elemental mapping identified Cs accumulation to discrete cytoplasmic locations within P. catenata cells, indicating a potential bioremediation option for Cs. Proteins related to stress responses and nutrient limitation (K, P) were stimulated by Cs treatment. Furthermore, selected K+ transport proteins were mis-regulated by Cs dosing, which indicates the importance of the K+ transport system for Cs accumulation. These findings enhance understanding of Cs fate and biological responses within Pseudanabaena blooms, and indicate that K exposure might provide a microbial bloom control strategy.
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Dec 2022
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[26226]
Open Access
Abstract: Batteries with inorganic solid-state electrolytes (ISSE) are attracting notable interest for next-generation systems implementing Lithium (Li) metal anodes, in view of achieving higher energy densities combined with superior safety. Notwithstanding extensive research and development work, this technology is not yet ready for industrial implementation, one of the key challenges being the stability of ISSEs, chiefly at the anodic interface. This work attacks this issue for the specific case of the LAGP/Li (Lithium Aluminium Germanium Phosphate/Lithium) interface with a micro-spectroscopic approach centred on post mortem Scanning Transmission X-ray Microscopy (STXM) of intact LMO/LAGP/Li thin-film batteries, microfabricated in discharged state. Pristine and cycled cells were mapped to pinpoint morphochemical changes, induced by electrochemical ageing. The evidenced shape changes, corresponding to mechanical damaging of the solid/solid electrodic interfaces correlate with LAGP decomposition at the anode, leading to reduction of Ge, whereas the chemical state at the cathodic interface is preserved. Thanks to its submicron spacial resolution, the STXM at the Ge L-edge and O K-edge spectra allowed to assess the highly localized nature of the chemical transformation of LAGP and its correlation with the formation of Li outgrowth features.
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Nov 2022
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I08-Scanning X-ray Microscopy beamline (SXM)
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Diamond Proposal Number(s):
[23540]
Open Access
Abstract: Mineral-associated organic matter is an integral part of soil carbon pool. Biological processes contribute to the formation of such organo-mineral complexes when soil microbes, and in particular soil fungi, deposit a suite of extracellular metabolic compounds and their necromass on the mineral surfaces. While studied in bulk, micro- to nanoscale fungal–mineral interactions remain elusive. Of particular interest are the mutual effects at the interface between the fungal exometabolites and proximal mineral particles. In this work, we have grown saprotrophic and symbiotic fungi in contact with two soil minerals with contrasting properties: quartz and goethite, on top of X-ray transparent silicon nitride membrane windows and analyzed fungal hyphae by synchrotron-based scanning transmission X-ray microscopy in combination with near edge X-ray fine structure spectroscopy at C(K) and Fe(L) absorption edges. In the resultant chemical maps, we were able to visualize and differentiate organic compounds constituting the fungal cells, their extracellular metabolites, and the exometabolites adsorbing on the minerals. We found that the composition of the exometabolites differed between the fungal functional guilds, particularly, in their sugar to protein ratio and potassium concentration. In samples with quartz and goethite, we observed adsorption of the exometabolic compounds on the mineral surfaces with variations in their chemical composition around the particles. Although we did not observe clear alteration in the exometabolite chemistry upon mineral encounters, we show that fungal–mineral interaction result in reduction of Fe(III) in goethite. This process has been demonstrated for bulk systems, but, to our knowledge, this is the first observation on a single hypha scale offering insight into its underlying biological mechanisms. This demonstrates the link between processes initiated at the single-cell level to macroscale phenomena. Thus, spatially resolved chemical characterization of the microbial–mineral interfaces is crucial for an increased understanding of overall carbon cycling in soil.
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Jun 2022
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