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Enzyme catalysis captured using multiple structures from one crystal at varying temperatures

DOI: 10.1107/S205225251800386X DOI Help

Authors: Sam Horrell (University of Essex) , Demet Kekilli (University of Essex) , Kakali Sen (University of Essex; STFC Daresbury Laboratory) , Robin L. Owen (Diamond Light Source) , Florian S. N. Dworkowski (Swiss Light Source) , Svetlana V. Antonyuk (University of Liverpool) , Thomas W. Keal (STFC Daresbury Laboratory) , Chin W. Yong (STFC Daresbury Laboratory) , Robert R. Eady (University of Liverpool) , S. Samar Hasnain (University of Liverpool) , Richard W. Strange (University of Essex) , Mike Hough (University of Essex)
Co-authored by industrial partner: No

Type: Journal Paper
Journal: Iucrj , VOL 5

State: Published (Approved)
Published: May 2018
Diamond Proposal Number(s): 11175

Open Access Open Access

Abstract: High-resolution crystal structures of enzymes in relevant redox states have transformed our understanding of enzyme catalysis. Recent developments have demonstrated that X-rays can be used, via the generation of solvated electrons, to drive reactions in crystals at cryogenic temperatures (100 K) to generate `structural movies' of enzyme reactions. However, a serious limitation at these temperatures is that protein conformational motion can be significantly supressed. Here, the recently developed MSOX (multiple serial structures from one crystal) approach has been applied to nitrite-bound copper nitrite reductase at room temperature and at 190 K, close to the glass transition. During both series of multiple structures, nitrite was initially observed in a `top-hat' geometry, which was rapidly transformed to a `side-on' configuration before conversion to side-on NO, followed by dissociation of NO and substitution by water to reform the resting state. Density functional theory calculations indicate that the top-hat orientation corresponds to the oxidized type 2 copper site, while the side-on orientation is consistent with the reduced state. It is demonstrated that substrate-to-product conversion within the crystal occurs at a lower radiation dose at 190 K, allowing more of the enzyme catalytic cycle to be captured at high resolution than in the previous 100 K experiment. At room temperature the reaction was very rapid, but it remained possible to generate and characterize several structural states. These experiments open up the possibility of obtaining MSOX structural movies at multiple temperatures (MSOX-VT), providing an unparallelled level of structural information during catalysis for redox enzymes.

Journal Keywords: serial crystallography; copper nitrite reductase; variable temperature; radiolysis; structural dynamics; density functional theory

Diamond Keywords: Enzymes

Subject Areas: Biology and Bio-materials, Chemistry

Instruments: I24-Microfocus Macromolecular Crystallography

Other Facilities: Swiss Light Source

Added On: 27/03/2018 11:46


Discipline Tags:

Biochemistry Catalysis Chemistry Structural biology Life Sciences & Biotech

Technical Tags:

Diffraction Macromolecular Crystallography (MX)