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Characterization and engineering of a plastic-degrading aromatic polyesterase

DOI: 10.1073/pnas.1718804115 DOI Help

Authors: Harry P. Austin (University of Portsmouth) , Mark D. Allen (University of Portsmouth) , Bryon S. Donohoe (National Renewable Energy Lab) , Nicholas A. Rorrer (National Renewable Energy Laboratory) , Fiona L. Kearns (University of South Florida) , Rodrigo L. Silveira (National Renewable Energy Laboratory; University of Campinas) , Benjamin C. Pollard (University of South Florida) , Graham Dominick (National Renewable Energy Laboratory) , Ramona Duman (Diamond Light Source) , Kamel El Omari (Diamond Light Source) , Vitaliy Mykhaylyk (Diamond Light Source) , Armin Wagner (Diamond Light Source) , William E. Michener (National Renewable Energy Laboratory) , Antonella Amore (National Renewable Energy Laboratory) , Munir S. Skaf (University of Campinas) , Michael F. Crowley (National Renewable Energy Laboratory) , Alan W. Thorne (University of Portsmouth) , Christopher W. Johnson (National Renewable Energy Laboratory) , H. Lee Woodcock (University of South Florida) , John E. Mcgeehan (University of Portsmouth) , Gregg T. Beckham (National Renewable Energy Laboratory)
Co-authored by industrial partner: No

Type: Journal Paper
Journal: Proceedings Of The National Academy Of Sciences , VOL 39

State: Published (Approved)
Published: April 2018
Diamond Proposal Number(s): 17212

Open Access Open Access

Abstract: Poly(ethylene terephthalate) (PET) is one of the most abundantly produced synthetic polymers and is accumulating in the environment at a staggering rate as discarded packaging and textiles. The properties that make PET so useful also endow it with an alarming resistance to biodegradation, likely lasting centuries in the environment. Our collective reliance on PET and other plastics means that this buildup will continue unless solutions are found. Recently, a newly discovered bacterium, Ideonella sakaiensis 201-F6, was shown to exhibit the rare ability to grow on PET as a major carbon and energy source. Central to its PET biodegradation capability is a secreted PETase (PET-digesting enzyme). Here, we present a 0.92 Å resolution X-ray crystal structure of PETase, which reveals features common to both cutinases and lipases. PETase retains the ancestral α/β-hydrolase fold but exhibits a more open active-site cleft than homologous cutinases. By narrowing the binding cleft via mutation of two active-site residues to conserved amino acids in cutinases, we surprisingly observe improved PET degradation, suggesting that PETase is not fully optimized for crystalline PET degradation, despite presumably evolving in a PET-rich environment. Additionally, we show that PETase degrades another semiaromatic polyester, polyethylene-2,5-furandicarboxylate (PEF), which is an emerging, bioderived PET replacement with improved barrier properties. In contrast, PETase does not degrade aliphatic polyesters, suggesting that it is generally an aromatic polyesterase. These findings suggest that additional protein engineering to increase PETase performance is realistic and highlight the need for further developments of structure/activity relationships for biodegradation of synthetic polyesters.

Journal Keywords: biodegradation; poly(ethylene terephthalate); poly(ethylene furanoate); plastics recycling; cutinase

Diamond Keywords: Plastics; Bacteria; Biodegradation; Enzymes

Subject Areas: Biology and Bio-materials, Chemistry, Environment

Instruments: I03-Macromolecular Crystallography , I04-Macromolecular Crystallography , I23-Long wavelength MX

Added On: 18/04/2018 09:43


Discipline Tags:

Catalysis Earth Sciences & Environment Climate Change Engineering & Technology Biotechnology Life Sciences & Biotech Structural biology Materials Science Polymer Science Chemistry Biochemistry

Technical Tags:

Diffraction Macromolecular Crystallography (MX)