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An aspartate-specific solute-binding protein regulates protein kinase G activity to control glutamate metabolism in mycobacteria

DOI: 10.1128/mBio.00931-18 DOI Help

Authors: Nabanita Bhattacharyya (University of Leicester) , Irene Nailain Nkumama (University of Leicester) , Zaccheus Newland-Smith (University of Leicester) , Li-Ying Lin (University of Leicester) , Wen Yin (University of Leicester) , Rebecca E. Cullen (University of Leicester) , Jack S. Griffiths (University of Leicester) , Alexander R. Jarvis (University of Leicester) , Michael J. Price (University of Leicester) , Pei Ying Chong (University of Leicester) , Russell Wallis (University of Leicester) , Helen O'Hare (University of Leicester)
Co-authored by industrial partner: No

Type: Journal Paper
Journal: Mbio , VOL 9

State: Published (Approved)
Published: July 2018
Diamond Proposal Number(s): 14692 , 10369 , 8359

Open Access Open Access

Abstract: Signaling by serine/threonine phosphorylation controls diverse processes in bacteria, and identification of the stimuli that activate protein kinases is an outstanding question in the field. Recently, we showed that nutrients stimulate phosphorylation of the protein kinase G substrate GarA in Mycobacterium smegmatis and Mycobacterium tuberculosis and that the action of GarA in regulating central metabolism depends upon whether it is phosphorylated. Here we present an investigation into the mechanism by which nutrients activate PknG. Two unknown genes were identified as co-conserved and co-expressed with PknG: their products were a putative lipoprotein, GlnH, and putative transmembrane protein, GlnX. Using a genetic approach, we showed that the membrane protein GlnX is functionally linked to PknG. Furthermore, we determined that the ligand specificity of GlnH matches the amino acids that stimulate GarA phosphorylation. We determined the structure of GlnH in complex with different amino acid ligands (aspartate, glutamate, and asparagine), revealing the structural basis of ligand specificity. We propose that the amino acid concentration in the periplasm is sensed by GlnH and that protein-protein interaction allows transmission of this information across the membrane via GlnX to activate PknG. This sensory system would allow regulation of nutrient utilization in response to changes in nutrient availability. The sensor, signaling, and effector proteins are conserved throughout the Actinobacteria, including the important human pathogen Mycobacterium tuberculosis, industrial amino acid producer Corynebacterium glutamicum, and antibiotic-producing Streptomyces species.

Journal Keywords: Actinobacteria; Corynebacterium; Mycobacterium tuberculosis; sensory transduction processes; serine/threonine kinases; structural biology

Diamond Keywords: Bacteria; Tuberculosis (TB)

Subject Areas: Biology and Bio-materials, Chemistry

Instruments: I03-Macromolecular Crystallography , I04-Macromolecular Crystallography , I24-Microfocus Macromolecular Crystallography

Added On: 01/08/2018 09:28


Discipline Tags:

Pathogens Infectious Diseases Health & Wellbeing Biochemistry Genetics Chemistry Structural biology Life Sciences & Biotech

Technical Tags:

Diffraction Macromolecular Crystallography (MX)