Show Abstract ▼

Abstract: We report an engineered panel of ene-reductases (ERs) from Thermus scotoductus SA-01 (TsER) that combines control over facial selectivity in the reduction of electron deficient Cdouble bondC double bonds with thermostability (up to 70 °C), organic solvent tolerance (up to 40 % v/v) and a broad substrate scope (23 compounds, three new to literature). Substrate acceptance and facial selectivity of 3-methylcyclohexenone was rationalized by crystallisation of TsER C25D/I67T and in silico docking. The TsER variant panel shows excellent enantiomeric excess (ee) and yields during bi-phasic preparative scale synthesis, with isolated yield of up to 93 % for 2R,5S-dihydrocarvone (3.6 g). Turnover frequencies (TOF) of approximately 40 000 h−1 were achieved, which are comparable to rates in hetero- and homogeneous metal catalysed hydrogenations. Preliminary batch reactions also demonstrated the reusability of the reaction system by consecutively removing the organic phase (n-pentane) for product removal and replacing with fresh substrate. Four consecutive batches yielded ca. 27 g L−1 R-levodione from a 45 mL aqueous reaction, containing less than 17 mg (10 μM) enzyme and the reaction only stopping because of acidification. The TsER variant panel provides a robust, highly active and stereocomplementary base for further exploitation as a tool in preparative organic synthesis.

Open Access

Show Abstract ▼

Abstract: A detailed understanding of the interactions between small-molecule ligands and their proposed binding targets is of the utmost importance for modern drug-development programs. Cellular retinoic acid-binding proteins I and II (CRABPI and CRABPII) facilitate a number of vital retinoid signalling pathways in mammalian cells and offer a gateway to manipulation of signalling that could potentially reduce phenotypes in serious diseases, including cancer and neurodegeneration. Although structurally very similar, the two proteins possess distinctly different biological functions, with their signalling influence being exerted through both genomic and nongenomic pathways. In this article, crystal structures are presented of the L29C mutant of Homo sapiens CRABPI in complex with naturally occurring fatty acids (1.64 Å resolution) and with the synthetic retinoid DC645 (2.41 Å resolution), and of CRABPII in complex with the ligands DC479 (1.80 Å resolution) and DC645 (1.71 Å resolution). DC645 and DC479 are two potential drug compounds identified in a recent synthetic retinoid development program. In particular, DC645 has recently been shown to have disease-modifying capabilities in neurodegenerative disease models by activating both genomic and nongenomic signalling pathways. These co-crystal structures demonstrate a canonical binding behaviour akin to that exhibited with all-trans-retinoic acid and help to explain how the compounds are able to exert an influence on part of the retinoid signalling cascade.

Open Access

Show Abstract ▼

Abstract: We have previously reported the synthesis of thermoresponsive poly(stearyl methacrylate)-poly(benzyl methacrylate) [PSMA-PBzMA] diblock copolymer vesicles in mineral oil via polymerisation-induced self-assembly (PISA). Such vesicles undergo a vesicle-to-worm transition on heating, which provides an interesting new oil-thickening mechanism (see M. J. Derry, et al., Angew. Chem., 2017, 56, 1746–1750). In the present study, we report an unexpected reduction in dispersion viscosity when heating vesicles of approximately the same composition above a certain critical temperature. Transmission electron microscopy (TEM) studies indicate rich thermoresponsive behavior, with vesicles present at 20 °C, worms being formed at 130 °C and spheres generated at 180 °C, indicating that a worm-to-sphere transition occurs after the initial vesicle-to-worm transition. Moreover, we have also prepared a series of new thermoresponsive diblock copolymer vesicles by RAFT dispersion copolymerization of n-butyl methacrylate (BuMA) with benzyl methacrylate (BzMA) using a poly(stearyl methacrylate) precursor in mineral oil. This model system was developed to examine whether statistical copolymerization of a suitable comonomer (BuMA) could be used to tune the critical onset temperature required for the vesicle-to-worm transition. Indeed, oscillatory rheology studies confirmed that targeting membrane-forming blocks containing up to 50 mol% BuMA lowered the critical onset temperature required to induce the vesicle-to-worm transition to 109 °C, compared to 167 °C for the reference PSMA14-PBzMA125 diblock copolymer. Variable temperature small-angle X-ray scattering (SAXS) experiments confirmed a vesicle-to-worm transition, with the vesicles initially present at 20 °C being converted into worms when heated above 130 °C. Furthermore, a substantial reduction in dispersion viscosity was again observed when heating above the critical onset temperature. TEM and shear-induced polarized light imaging (SIPLI) studies indicate that linear worms are no longer present at 160 °C and 170 °C respectively, suggesting a subsequent worm-to-sphere transition. The thermal transitions studied herein proved to be irreversible on cooling on normal experimental timescales (hours).

Show Abstract ▼

Abstract: The human glucose transporters GLUT1 and GLUT3 have a central role in glucose uptake as canonical members of the Sugar Porter (SP) family. GLUT1 and GLUT3 share a fully conserved substrate-binding site with identical substrate coordination, but differ significantly in transport affinity in line with their physiological function. Here, we present a 2.4 Å crystal structure of GLUT1 in an inward open conformation and compare it with GLUT3 using both structural and functional data. Our work shows that interactions between a cytosolic “SP motif” and a conserved “A motif” stabilize the outward conformational state and increases substrate apparent affinity. Furthermore, we identify a previously undescribed Cl− ion site in GLUT1 and an endofacial lipid/glucose binding site which modulate GLUT kinetics. The results provide a possible explanation for the difference between GLUT1 and GLUT3 glucose affinity, imply a general model for the kinetic regulation in GLUTs and suggest a physiological function for the defining SP sequence motif in the SP family.

Open Access

Show Abstract ▼

Abstract: Electron cryotomography (cryoET), an electron cryomicroscopy (cryoEM) modality, has changed our understanding of biological function by revealing the native molecular details of membranes, viruses, and cells. However, identification of individual molecules within tomograms from cryoET is challenging because of sample crowding and low signal-to-noise ratios. Here, we present a tagging strategy for cryoET that precisely identifies individual protein complexes in tomograms without relying on metal clusters. Our method makes use of DNA origami to produce “molecular signposts” that target molecules of interest, here via fluorescent fusion proteins, providing a platform generally applicable to biological surfaces. We demonstrate the specificity of signpost origami tags (SPOTs) in vitro as well as their suitability for cryoET of membrane vesicles, enveloped viruses, and the exterior of intact mammalian cells.