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Abstract: We performed a combined theoretical and experimental investigation of the orbital magnetism and magnetocrystalline anisotropy of isolated Co and Fe adatoms on Pd(111) and Rh(111). Theoretical calculations of the spin and orbital moments are based on ab initio spin-polarized density-functional theory (DFT) including a self-consistent treatment of spin-orbit coupling. The calculations use a slab model to represent the adsorbate/substrate complex and allow for a complete structural relaxation leading to a strong inward displacement of the adatom and modest vertical and lateral relaxations in the substrate atoms. Compared to an idealized geometry where the atoms are kept on bulk lattice positions up to the surface, relaxation leads to a much stronger adatom/ligand hybridization. This is also reflected in the results for orbital moments and magnetocrystalline anisotropy energy (MAE). The enhanced hybridization leads to strong quenching of the adatom orbital moments but also to the formation of large induced spin and orbital moments in the substrate. As a consequence, we find that the substrate contribution to the MAE is much more important than estimated before on the basis of studies using an idealized geometry. We also find the surprising result that the MAE strongly depends on the adsorption site. The magnitude and even the sign of the MAE change for adatoms on face-centered cubic with respect to the ones on hexagonal close-packed hollow sites on the (111) surface. The dependence of the MAE on the combination of adatom and substrate has been analyzed in terms of the electronic structure, leading to a sound physical picture of the origin of the MAE. A fundamental problem, however, is the correct prediction of the size of the orbital moments of the adatoms. We suggest that this problem can be solved only via post-DFT corrections introducing an orbital dependence of the exchange potential. The theoretical results are compared to site-averaged, element-specific x-ray magnetic circular dichroism (XMCD) measurements. Low-temperature XMCD spectra and magnetization curves reveal weak out-of-plane anisotropy for Fe adatoms on both substrates. Interestingly, Co adatoms on Rh(111) present in-plane anisotropy with MAE of about -0.6 meV, contrary to the known out-of-plane anisotropy of Co on Pd(111) and Pt(111). The orbital to spin magnetic-moment ratio measured by XMCD shows that the Co adatoms present much stronger orbital magnetization components compared to Fe. The connection between orbital moments and MAE is discussed at the theoretical level including the contribution of the induced substrate magnetization.

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Abstract: When using coherent x-rays to perform lensless imaging, it is the complex wave field exiting the sample or, in the case of the Bragg geometry, the deformed electron density distribution of a crystal, that is being sought. For most samples, to some extent, the image will be complex, containing both an amplitude and phase variation across the sample. We have developed versions of the hybrid input–output (HIO) and error reduction (ER) algorithms that are very robust for the inversion to complex objects from three-dimensional (3D) coherent x-ray diffraction (CXD) data measured around a Bragg spot of a small crystal. The development and behavior of these algorithms will be discussed in the context of inverting a 3D CXD pattern measured around a (111) Bragg spot of a silver nanocube.

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Abstract: Here we describe an x-ray structure of wild-type lactose permease (LacY) from Escherichia coli determined by manipulating phospholipid content during crystallization. The structure exhibits the same global fold as the previous x-ray structures of a mutant that binds sugar but cannot catalyze translocation across the membrane. LacY is organized into two six-helix bundles with twofold pseudosymmetry separated by a large interior hydrophilic cavity open only to the cytoplasmic side and containing the side chains important for sugar and H+ binding. To initiate transport, binding of sugar and/or an H+ electrochemical gradient increases the probability of opening on the periplasmic side. Because the inward-facing conformation represents the lowest free-energy state, the rate-limiting step for transport may be the conformational change leading to the outward-facing conformation.

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Abstract: New World arenaviruses, which cause severe hemorrhagic fever, rely upon their envelope glycoproteins for attachment and fusion into their host cell. Here we present the crystal structure of the Machupo virus GP1 attachment glycoprotein, which is responsible for high-affinity binding at the cell surface to the transferrin receptor. This first structure of an arenavirus glycoprotein shows that GP1 consists of a novel alpha/beta fold. This provides a blueprint of the New World arenavirus attachment glycoproteins and reveals a new architecture of viral attachment, using a protein fold of unknown origins.

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Abstract: By using absorption and fluorescence spectroscopy, we compared the effects of heat and light treatments on the phycobilisome (PBS) antenna of Synechocystis sp. PCC 6803 cells. Fluorescence emission spectra obtained upon exciting predominantly PBS, recorded at 25 °C and 77 K, revealed characteristic changes upon heat treatment of the cells. A 5-min incubation at 50 °C, which completely inactivated the activity of photosystem II, led to a small but statistically significant decrease in the F680/F655 fluorescence intensity ratio. In contrast, heat treatment at 60 °C resulted in a much larger decrease in the same ratio and was accompanied by a blue-shift of the main PBS emission band at around 655 nm (F655), indicating an energetic decoupling of PBS from chlorophylls and reorganizations in its internal structure. (Upon exciting PBS, F680 originates from photosystem II and from the terminal emitter of PBS.). Very similar changes were obtained upon exposing the cells to high light (600–7500 μmol photons m−2 s−1) for different time periods (10 min to 3 h). In cells with heat-inactivated photosystem II, the variations caused by light treatment could clearly be assigned to a similar energetic decoupling of the PBS from the membrane and internal reorganizations as induced at around 60 °C. These data can be explained within the frameworks of thermo-optic mechanism [Cseh et al. 2000, Biochemistry 39, 15250]: in high light the heat packages originating from dissipation might lead to elementary structural changes in the close vicinity of dissipation in heat-sensitive structural elements, e.g. around the site where PBS is anchored to the membrane. This, in turn, brings about a diminishment in the energy supply from PBS to the photosystems and reorganization in the molecular architecture of PBS.