NONE-No attached Diamond beamline
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Abstract: Accurate electron density mapping is quite a common practice for crystals cooled at low temperature and accurately measured. This
is not true for species under external perturbation, due to complicated experimental conditions. Studying molecular crystals in excitedstates is a challenge, Coppens(2009), and a purely experimental electron density mapping is not possible at present. So far, the samelimitation affected molecular crystals at high pressure, with only few attempts to use theoretical multipoles to fit experimental data,Fabbiani (2011). Here we report on the first unconstrained multipolar model, refined for syn-l,6;8,13 biscarbonyl[14]annulene (BCA)
at P=7.7 GPa. BCA was the subject of a low temperature data collection by Destro (1995). The molecule (close to C2v symmetry) has afair aromaticity, but it progressively localizes double and single bonds as a function of pressure. At 7.7 GPa the geometrical distortionis quite evident and mirrored by the electron density. The experiment, carried out at Diamond Light Source, was possible combining:a) high energy (40 Kev) to overcome the resolution problems caused by diamond anvil cells and reduce absorption and extinction; b)microfocused beam (30 micron) to minimize spurious X-ray diffusion; c) two crystals in the DAC, to increase data coverage; d)sufficient pressure to quench atomic motion. The final agreement is obviously worse than what typically obtained at ambientpressure. However, the model is satisfactory because: a) the deformation density is sensible and in agreement with the calculated
one; b) the distribution of residuals is normal and no significant error is evident. The study proves that aromatic molecules are morereactive when squeezed, in keeping with the recent theoretical study by Hoffmann et al. on benzene. The Figure shows the staticdeformation density of BCA in 3D, obtained from a multipolar model refined against the experimental structure factors.
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Aug 2014
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NONE-No attached Diamond beamline
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Open Access
Abstract: Nondestructive microscale investigation of objects is an invaluable tool in life and materials sciences. Currently, such investigation is mainly performed with X-ray laboratory systems, which are based on absorption-contrast imaging and cannot access the information carried by the phase of the X-ray waves. The phase signal is, nevertheless, of great value in X-ray imaging as it is complementary to the absorption information and in general more sensitive to visualize features with small density differences. Synchrotron facilities, which deliver a beam of high brilliance and high coherence, provide the ideal condition to develop such advanced phase-sensitive methods, but their access is limited. Here we show how a small modification of a laboratory setup yields simultaneously quantitative and 3D absorption and phase images of the object. This single-shot method is based on correlation of X-ray near-field speckles and represents a significant broadening of the capabilities of laboratory-based X-ray tomography.
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Oct 2015
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NONE-No attached Diamond beamline
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Open Access
Abstract: The rate at which X-ray structures of membrane proteins are solved is on a par with that of soluble proteins in the late 1970s. There are still many obstacles facing the membrane protein structural community. Recently, there have been several technical achievements in the field that have started to dramatically accelerate structural studies. Here, we summarize these so-called ‘tricks-of-the-trade’ and include case studies of several mammalian transporters.
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Jun 2010
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NONE-No attached Diamond beamline
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Martin
Crusat
,
Junfeng
Liu
,
Angelina
Sa Palma
,
Robert A.
Childs
,
Yan
Liu
,
Stephen A.
Wharton
,
Yi Pu
Lin
,
Peter J.
Coombs
,
Stephen R.
Martin
,
Mikhail
Matrosovich
,
Zi
Chen
,
David J.
Stevens
,
Vo Minh
Hien
,
Tran Tan
Thanh
,
Le Nguyen Truc
Nhu
,
Lam Anh
Nguyet
,
Do Quang
Ha
,
H Rogier
Van Doorn
,
Tran Tinh
Hien
,
Harald S.
Conradt
,
Makoto
Kiso
,
Steven
Gamblin
,
Wengang
Chai
,
John J.
Skehel
,
Alan J.
Hay
,
Jeremy
Farrar
,
Menno D.
De Jong
,
Ten
Feizi
Abstract: As avian influenza A(H5N1) viruses continue to circulate in Asia and Africa, global concerns of an imminent pandemic persist. Recent experimental studies suggest that efficient transmission between humans of current H5N1 viruses only requires a few genetic changes. An essential step is alteration of the virus hemagglutinin from preferential binding to avian receptors for the recognition of human receptors present in the upper airway. We have identified receptor-binding changes which emerged during H5N1 infection of humans, due to single amino acid substitutions, Ala134Val and Ile151Phe, in the hemagglutinin. Detailed biological, receptor-binding, and structural analyses revealed reduced binding of the mutated viruses to avian-like receptors, but without commensurate increased binding to the human-like receptors investigated, possibly reflecting a receptor-binding phenotype intermediate in adaptation to more human-like characteristics. These observations emphasize that evolution in nature of avian H5N1 viruses to efficient binding of human receptors is a complex multistep process.
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Dec 2013
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NONE-No attached Diamond beamline
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Abstract: The Diamond storage ring uses CESR type superconducting cavities. These cavities have a fixed coupling resulting in fixed Qext which is considerably higher than the optimum. We use 3 stub tuners to match the cavities under these non-optimum conditions. Diamond Cavity-1 will soon be refurbished. This opportunity could be used to lower the Qext on the cavity. One of the options is to modify the coupling tongue geometry along with a matching section. This may require cutting off the beam tube with the coupler for rework or it may need to be newly fabricated. We investigated another option to lower the Qext of the cavity by optimising the location of the window with respect to the cavity, maintaining the same coupling tongue geometry. The height of the waveguide on the vacuum side of the window differs from that of the coupling waveguide on the cavity resulting in a step. The location of window with respect to the cavity makes a significant difference to the ultimate Qext obtained after putting the window in place. In this paper we present the results of our numerical simulations comparing the present and the proposed window position under different operating conditions.
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May 2014
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NONE-No attached Diamond beamline
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Open Access
Abstract: Suppression of the sextupole resonance driving terms (RDTs) is a widely used technique for optimising the theoretical on and off-momentum dynamic aperture for electron storage rings. Recently, this technique was applied online to the Diamond storage ring, with suppression of individual RDTs achieved via a sextupole family to RDT response matrix*. In this paper we present recent studies of the method, in which the ability to improve the lifetime and injection efficiency are investigated. An extension of the technique is investigated by combining it with the Robust Conjugate Direction Search (RCDS) optimisation algorithm**. *J. Bengtsson, et al., Phys. Rev. ST Accel. Beams 18, 074002, (2015).
**X. Huang, et al., Nucl. Instrum. Methods Phys. Res. Sect. A 726, 77, (2013).
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Jun 2016
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NONE-No attached Diamond beamline
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Abstract: The increasing efforts in the synchrotron light sources community toward the design of a diffraction limited source at multi-keV photon energy have eventually stimulated the existing facilities to investigate possible upgrade paths to higher photon brightness and lower emittances to maintain their competitiveness within the users’ community. We present a possible option for upgrading 3rd generation light sources based on a rebiuld of the arcs with MBA cells, using diamond as an example. Emphasis is given to the AP desing issues with a view to minimal changes to the machine layout, contained cost and minimal downtime
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May 2013
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NONE-No attached Diamond beamline
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Abstract: The single bunch dynamics in the Diamond storage ring has been analysed with a multiparticle tracking code and compared with the results of a wealth of diagnostics, including streak camera, Schottky diodes and FTIR spectra. The interplay of various wakefield sources has been studied and it has been found that the THz spectrum can be reproduced in many cases with simple impedance models, both below and above the bursting threshold.
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May 2015
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NONE-No attached Diamond beamline
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Abstract: Ultra-low emittance lattices will operate with reduced dynamics apertures. New injection schemes are currently investigated in order to guarantee sufficient injection efficiency. A promising candidate is a pulsed kicker with a nonlinear magnetic field. The studies presented in this paper prove that this kicker allows injection with reduced dynamic aperture and provide minimal perturbation of the stored beam during Top-Up injection. Plans to install such a device at the Diamond light source are outlined.
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May 2013
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NONE-No attached Diamond beamline
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Abstract: The Advanced Photon Source and other existing storage ring light sources are contemplating replacing an existing, operating storage ring with a multi-bend achromat lattice. One issue is that existing light sources have large user communities who are greatly inconvenienced by extended shutdowns. Hence, there will be a premium placed on rapid commissioning of the new lattice. To better understand the possibilities, we undertook a survey of recent commissioning experience at third-generation light sources. We present a summary of that survey here.
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May 2015
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