NONE-No attached Diamond beamline
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Holger
Greschik
,
Magnus
Althage
,
Ralf
Flaig
,
Yoshiteru
Sato
,
Virginie
Chavant
,
Carole
Peluso-iltis
,
Laurence
Choulier
,
Philippe
Cronet
,
Natacha
Rochel
,
Roland
Schüle
,
Per-erik
P.e. Strömstedt
,
Dino
Moras
Abstract: Although structural studies on the ligand-binding domain (LBD) have established the general mode of nuclear receptor (NR)/coactivator interaction, determinants of binding specificity are only partially understood. The LBD of estrogen receptor-? (ER?), for example, interacts only with a region of peroxisome proliferator-activated receptor coactivator (PGC)-1?, which contains the canonical LXXLL motif (NR box2), whereas the LBD of estrogen-related receptor-? (ERR?) also binds efficiently an untypical, LXXYL-containing region (NR box3) of PGC-1?. Surprisingly, in a previous structural study, the ER? LBD has been observed to bind NR box3 of transcriptional intermediary factor (TIF)-2 untypically via LXXYL, whereas the ERR? LBD binds this region of TIF-2 only poorly. Here we present a new crystal structure of the ERR? LBD in complex with a PGC-1? box3 peptide. In this structure, residues N-terminal of the PGC-1? LXXYL motif formed contacts with helix 4, the loop connecting helices 8 and 9, and with the C terminus of the ERR? LBD. Interaction studies using wild-type and mutant PGC-1? and ERR? showed that these contacts are functionally relevant and are required for efficient ERR?/PGC-1? interaction. Furthermore, a structure comparison between ERR? and ER? and mutation analyses provided evidence that the helix 8–9 loop, which differs significantly in both nuclear receptors, is a major determinant of coactivator binding specificity. Finally, our results revealed that in ERR? the helix 8–9 loop allosterically links the LBD homodimer interface with the coactivator cleft, thus providing a plausible explanation for distinct PGC-1? binding to ERR? monomers and homodimers.
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Jul 2008
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NONE-No attached Diamond beamline
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Jul 2008
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NONE-No attached Diamond beamline
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Abstract: We report a sequent phase transition using high-resolution synchrotron x-ray scattering in a single crystalNd 1/2 Sr 1/2 MnO 3 . By measuring the peak profile of Bragg reflections, upon cooling, we observed an increase in the width of the Bragg reflections around the Curie temperature (252 K) corresponding to the transition from a paramagnetic to a ferromagnetic state. Below approximately 200 K, dramatic changes in the width and integrated intensity were observed. Changes continued until the formation of charge ordering with q=(12 ,0,0) at T CO =152?K . This charge ordering was observed to be the first order transition with a large hysteresis width of 10 K. This sequent transition is understood by the formation of different magnetic domains at different temperature ranges as that observed by neutronpowderdiffraction.
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Jul 2008
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NONE-No attached Diamond beamline
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Abstract: Ferrimagnetic nanoparticles have many uses in industry including in magnetic recording media and transformers, however these particles are often expensive to synthesize. In this study, the Fe3+-reducing bacteria Geobacter sulfurreducens and Shewanella oneidensis were used to synthesize spinel ferrite nanoparticles of the general chemical formula MxFe3–xO4, where M is either Co, Ni, Mn, Zn, or a combination of Mn and Zn. This was done at ambient temperatures through the dissimilatory reduction of Fe3+-oxyhydroxides containing the appropriate substitutional cations. A combination of L-edge and K-edge X-ray absorption spectroscopy (XAS) and L-edge X-ray magnetic circular dichroism (XMCD) was used to determine the site occupancies, valence, and local structure of the Fe and substitutional cations within the spinels. The Ni and Co ferrites produced using each bacterium were very similar and therefore this study concludes that, despite the difference in reduction mechanism of the bacteria used, the end-product is remarkably unaltered. Nickel ferrites contained only Ni2+, with at least 80% in Oh coordination. Cobalt ferrites contained only Co2+ but with a significant proportion (up to 45%) in Td coordination, showing a slight preference for Td sites. The Mn-ferrites contained Mn2+ only on the Oh sites but a mixture of Mn2+ and Mn3+ on Td sites when the amount of Mn exceeded 3% (compared to the amount of Fe) or some Zn was also present. This study successfully produced a range of nanoparticulate ferrites that could be produced industrially using relatively environmentally benign methodologies.
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Jul 2008
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NONE-No attached Diamond beamline
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Abstract: Soft X-ray resonant magnetic scattering offers a unique element-, site- and valence- specific probe to study magnetic structures on the nanoscopic length scale. This new technique, which combines X-ray scattering with X-ray magnetic circular and linear dichroism, is ideally suited to investigate magnetic superlattices and magnetic domain structures. The theoretical analysis of the polarization dependence to determine the vector magnetization profile is presented. This is illustrated with examples studying the closure domains in self-organising magnetic domain structures, the magnetic order in patterned samples, and the local configuration of magnetic nano-objects using coherent X-rays.
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Jul 2008
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Detectors
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Abstract: Future high-luminosity colliders, such as the Super-LHC at CERN, will require pixel detectors capable of withstanding extremely high radiation damage. In this article, the performances of various 3D detector structures are simulated with up to 1×1016 1 MeV-neq/cm2 radiation damage. The simulations show that 3D detectors have higher collection efficiency and lower depletion voltages than planar detectors due to their small electrode spacing.
When designing a 3D detector with a large pixel size, such as an ATLAS sensor, different electrode column layouts are possible. Using a small number of n+ readout electrodes per pixel leads to higher depletion voltages and lower collection efficiency, due to the larger electrode spacing. Conversely, using more electrodes increases both the insensitive volume occupied by the electrode columns and the capacitive noise. Overall, the best performance after 1×1016 1 MeV-neq/cm2 damage is achieved by using 4–6 n+ electrodes per pixel.
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Jul 2008
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I02-Macromolecular Crystallography
I03-Macromolecular Crystallography
I04-Macromolecular Crystallography
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Abstract: The FACT complex is a conserved cofactor for RNA polymerase II elongation through nucleosomes. FACT bears histone chaperone activity and contributes to chromatin integrity. However, the molecular mechanisms behind FACT function remain elusive. Here we report biochemical, structural, and mutational analyses that identify the peptidase homology domain of the Schizosaccharomyces pombe FACT large subunit Spt16 (Spt16-N) as a binding module for histones H3 and H4. The 2.1-Å crystal structure of Spt16-N reveals an aminopeptidase P fold whose enzymatic activity has been lost. Instead, the highly conserved fold directly binds histones H3–H4 through a tight interaction with their globular core domains, as well as with their N-terminal tails. Mutations within a conserved surface pocket in Spt16-N or posttranslational modification of the histone H4 tail reduce interaction in vitro, whereas the globular domains of H3–H4 and the H3 tail bind distinct Spt16-N surfaces. Our analysis suggests that the N-terminal domain of Spt16 may add to the known H2A–H2B chaperone activity of FACT by including a H3–H4 tail and H3–H4 core binding function mediated by the N terminus of Spt16. We suggest that these interactions may aid FACT-mediated nucleosome reorganization events.
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Jun 2008
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I22-Small angle scattering & Diffraction
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Abstract: Membranes of Gram-negative bacteria, mitochondria and chloroplasts receive and fold beta-barrel transmembrane proteins through the action of polypeptide transport-associated (POTRA) domains. In Escherichia coli, folding substrates are inserted into the outer membrane by the essential protein YaeT, a prototypic Omp85 protein. Here, the articulation between tandem POTRA domains in solution is defined by nuclear magnetic resonance (NMR) spectroscopy, indicating an unprecedented juxtaposition. The novel solution orientations of all five POTRA domains are revealed by small-angle X-ray scattering of the entire 46 kDa periplasmic region. NMR titration studies show that strands from YaeT's canonical folding substrate, PhoE, bind non-specifically along alternating sides of its mixed beta sheets, thus providing an ideal platform for helping to fold nascent outer-membrane proteins. Together, this provides the first structural model of how multiple POTRA domains recruit substrates from the periplasmic solution into the outer membrane.
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Jun 2008
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I16-Materials and Magnetism
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Abstract: The commensurate phase of multiferroic HoMn 2 O 5 was studied by x-ray magnetic scattering, both off-resonance and in resonant conditions at the Ho?L 3 edge. Below 40 K, magnetic ordering at the Ho sites is induced by the main Mn magnetic order parameter, and its temperature dependence is well accounted for by a simple Curie–Weiss susceptibility model. A lattice distortion of periodicity twice that of the magnetic order is also evidenced. The azimuthal scans confirm the model of the magnetic structure recently refined from neutron diffraction data for both Mn and Ho sites, indicating that the two sublattices interact via magnetic superexchange.
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Jun 2008
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I04-Macromolecular Crystallography
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Abstract: Hole in one! The first structure of an arylmalonate decarboxylase (AMDase; see picture), which reveals the mechanism by which this unusual cofactor-independent enzyme catalyses the decarboxylation of ?-arylmalonates, is presented. Notably, an active site “dioxyanion hole” motif is utilised to stabilise a putative high-energy enediolate intermediate. Other AMDases are also characterised, along with a Glu-racemase that also possesses a dioxyanion hole and promiscuous malonate decarboxylase activity.
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Jun 2008
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