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Abstract: This thesis presents new high-resolution resonant inelastic x-ray scattering (RIXS) studies in high-Tc cuprate superconductors (HTSs). RIXS measures elementary excitations of the type which characterise the ordered phases known to exist alongside superconductivity in the cuprates. The role that these phases play in the pairing mechanism which gives rise to superconductivity remains unclear. The work in this thesis therefore presents new measurements of the excitations with the aim of helping to constrain theoretical models of pairing. Spin fluctuations are characteristic of the antiferromagnetic phase of cuprates but are also seen to persist into superconducting phases. As a result, theories based on the Hubbard model often consider spin fluctuations to be important to pairing. The role of charge fluctuations, either competing or contributing to superconductivity, is also important to understand. The experimental work was performed at two new RIXS spectrometers, I21 at Diamond Light Source and ID32 at the European Synchrotron Radiation Facility, both optimised to achieve high intensity and energy resolution in the soft x-ray RIXS regime. Measurements are presented on single layer cuprate La2CuO4 where consideration of the prefactors to the RIXS intensity reveals the wavevector dependence of the dynamical susceptibility in new regions of the Brillouin zone. The measurements are extended to two doped compositions of La2-xSrxCuO4, x = 0.12 and 0.16. The spin fluctuations are characterised within a damped harmonic oscillator model which reveals the wavevector dependent anisotropy of the damping in doped compositions. New RIXS measurements in two-layer YBa2Cu3O6-x (YBCO) show similar effects. The charge order is also examined in YBCO revealing a broad wavevector dependent peak in the elastic intensity. This work is also a test of RIXS as a probe of low-energy excitations in well studied cuprate materials and provides insights into the RIXS intensity by comparison with a similar probe: inelastic neutron scattering.

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Abstract: The enzyme ForT catalyzes C–C bond formation between 5′-phosphoribosyl-1′-pyrophosphate (PRPP) and 4-amino-1H-pyrazole-3,5-dicarboxylate to make a key intermediate in the biosynthesis of formycin A 5′-phosphate by Streptomyces kaniharaensis. We report the 2.5 Å resolution structure of the ForT/PRPP complex and locate active site residues critical for PRPP recognition and catalysis.

Open Access

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Abstract: CDC7 is an essential Ser/Thr kinase that acts upon the replicative helicase throughout the S phase of the cell cycle and is activated by DBF4. Here, we present crystal structures of a highly active human CDC7-DBF4 construct. The structures reveal a zinc-finger domain at the end of the kinase insert 2 that pins the CDC7 activation loop to motif M of DBF4 and the C lobe of CDC7. These interactions lead to ordering of the substrate-binding platform and full opening of the kinase active site. In a co-crystal structure with a mimic of MCM2 Ser40 phosphorylation target, the invariant CDC7 residues Arg373 and Arg380 engage phospho-Ser41 at substrate P+1 position, explaining the selectivity of the S-phase kinase for Ser/Thr residues followed by a pre-phosphorylated or an acidic residue. Our results clarify the role of DBF4 in activation of CDC7 and elucidate the structural basis for recognition of its preferred substrates.

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Abstract: MxB/Mx2 is an interferon-induced dynamin-like GTPase, which restricts a number of life-threatening viruses. Because of its N-terminal region, predicted to be intrinsically disordered, and its propensity to self-oligomerize, purification of the full-length protein has not been successful in conventional E. coli expression systems. In this chapter, we describe an expression and purification procedure to obtain pure full-length wild-type MxB from suspension-adapted mammalian cells. We further describe how to characterize its GTPase activity and oligomerization function.

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Abstract: The dosing of layered materials with alkali metals has become a commonly used strategy in ARPES experiments. However, precisely what occurs under such conditions, both structurally and electronically, has remained a matter of debate. Here we perform a systematic study of 1T- HfTe 2 , a prototypical semimetal of the transition metal dichalcogenide family. By utilizing photon energy-dependent angle-resolved photoemission spectroscopy (ARPES), we have investigated the electronic structure of this material as a function of potassium (K) deposition. From the k z maps, we observe the appearance of 2D dispersive bands after electron dosing, with an increasing sharpness of the bands, consistent with the wave-function confinement at the topmost layer. In our highest-dosing cases, a monolayerlike electronic structure emerges, presumably as a result of intercalation of the alkali metal. Here, by bringing the topmost valence band below E F , we can directly measure a band overlap of ∼ 0.2 eV. However, 3D bulklike states still contribute to the spectra even after considerable dosing. Our work provides a reference point for the increasingly popular studies of the alkali metal dosing of semimetals using ARPES.