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Abstract: Competitive inhibitors of galactocerebrosidase (GALC) could be candidates for pharmacological chaperone therapy of patients with Krabbe disease. The known and selective nortropane-type iminosugar galacto-noeurostegine has been found to competitively inhibit GALC with Ki = 7 μM at pH 4.6, which is 330-fold more potent than the analogous deoxynoeurostegine. It was shown through X-ray protein crystallography that galacto-noeurostegine binds to the active site of GALC in its bicyclic form.

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Abstract: The peroxisomal multifunctional enzyme type 1 (MFE1) catalyzes two successive reactions in the β-oxidation cycle: the 2E-enoyl-CoA hydratase (ECH) and NAD+-dependent 3S-hydroxyacyl-CoA dehydrogenase (HAD) reactions. MFE1 is a monomeric enzyme that has five domains. The N-terminal part (domains A and B) adopts the crotonase fold and the C-terminal part (domains C, D and E) adopts the HAD fold. A new crystal form of MFE1 has captured a conformation in which both active sites are noncompetent. This structure, at 1.7 Å resolution, shows the importance of the interactions between Phe272 in domain B (the linker helix; helix H10 of the crotonase fold) and the beginning of loop 2 (of the crotonase fold) in stabilizing the competent ECH active-site geometry. In addition, protein crystallographic binding studies using optimized crystal-treatment protocols have captured a structure with both the 3-ketodecanoyl-CoA product and NAD+ bound in the HAD active site, showing the interactions between 3-ketodecanoyl-CoA and residues of the C, D and E domains. Structural comparisons show the importance of domain movements, in particular of the C domain with respect to the D/E domains and of the A domain with respect to the HAD part. These comparisons suggest that the N-terminal part of the linker helix, which interacts tightly with domains A and E, functions as a hinge region for movement of the A domain with respect to the HAD part.

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Abstract: This work describes the transformation of Pd species under reaction conditions to control the reactivity of heterogeneous catalysts, in which the real active sites for hydrogenation differ from simple Pd sites on a carbon nanofiber. Specifically, in the presence of C2H2/C2H4/H2 reaction mixtures, a permeable amorphous hydrocarbon overlayer is formed with simultaneous insertion of carbon atoms into the Pd lattice that drives the formation of low-coordinated Pd-carbide, thus providing more reactive Pd–Csub@Clayer sites (Csub: subsurface carbon; Clayer: carbon layer on the surface). The combination of these surface and subsurface effects hinders Pd-hydride, weakens ethylene adsorption confirmed by density functional theory (DFT) calculation, and thus improves catalytic behavior for selective hydrogenation of acetylene (93% ethylene selectivity at 100% conversion) with long-term stability. In the absence of hydrogen, a denser more crystalline overlayer is formed with severely restricted permeability, resulting in significantly lower activity. Moreover, by X-ray absorption spectroscopy (XAS) and in situ X-ray diffraction (XRD), it is demonstrated that different active sites dominate this catalytic reaction depending on the choice of adsorbate and exposure temperature. This work represents an alternative and arguably a simpler manner to design more reactive catalytic sites with the characteristics of long-term stability and facile preparation, which would enable promising industrial applications.

Open Access

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Abstract: An improved understanding of the phenomenon of dynamic precipitation is important to accurately model and simulate many industrial manufacturing processes with high strength Al-alloys. Dynamic ageing in 7xxx Al-alloys can occur as a result of both the strain and heat. Small angle X-ray scattering (SAXS) is an advanced technique that allows the precipitation processes to be studied in situ, but to date this has only been possible at lower than industrially relevant strain rates (e.g. < 10−3). In this contribution, we demonstrate the potential of in-situ SAXS studies of metallic alloys at higher strain rates (10−2) than previously, using a high energy synchrotron X-ray. The time resolved SAXS information has been used to evaluate dynamic precipitate evolution models and has demonstrated that at high strain rates a new regime must be considered which includes the more significant effect of vacancy annihilation, leading to a clear strain rate, rather than just strain, kinetic dependence.

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Abstract: The enzyme (R)-3-hydroxybutyrate dehydrogenase (HBDH) catalyzes the enantioselective reduction of 3-oxocarboxylates to (R)-3-hydroxycarboxylates, the monomeric precursors of biodegradable polyesters. Despite its application in asymmetric reduction, which prompted several engineering attempts of this enzyme, the order of chemical events in the active site, their contributions to limit the reaction rate, and interactions between the enzyme and non-native 3-oxocarboxylates have not been explored. Here, a combination of kinetic isotope effects, protein crystallography, and quantum mechanics/molecular mechanics (QM/MM) calculations were employed to dissect the HBDH mechanism. Initial velocity patterns and primary deuterium kinetic isotope effects establish a steady-state ordered kinetic mechanism for acetoacetate reduction by a psychrophilic and a mesophilic HBDH, where hydride transfer is not rate limiting. Primary deuterium kinetic isotope effects on the reduction of 3-oxovalerate indicate that hydride transfer becomes more rate limiting with this non-native substrate. Solvent and multiple deuterium kinetic isotope effects suggest hydride and proton transfers occur in the same transition state. Crystal structures were solved for both enzymes complexed to NAD+:acetoacetate and NAD+:3-oxovalerate, illustrating the structural basis for the stereochemistry of the 3-hydroxycarboxylate products. QM/MM calculations using the crystal structures as a starting point predicted a higher activation energy for 3-oxovalerate reduction catalyzed by the mesophilic HBDH, in agreement with the higher reaction rate observed experimentally for the psychrophilic orthologue. Both transition states show concerted, albeit not synchronous, proton and hydride transfers to 3-oxovalerate. Setting the MM partial charges to zero results in identical reaction activation energies with both orthologues, suggesting the difference in activation energy between the reactions catalyzed by cold- and warm-adapted HBDHs arises from differential electrostatic stabilization of the transition state. Mutagenesis and phylogenetic analysis reveal the catalytic importance of His150 and Asn145 in the respective orthologues.