I09-Surface and Interface Structural Analysis
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Diamond Proposal Number(s):
[12975]
Abstract: A combination of scanning tunneling microscopy, low-energy electron diffraction,and low-energy electron microscopy (LEEM) has been used to identify the structural phases formed by 7,7,8,8-tetracyanoquinodimethane (TCNQ) on Ag(111). These comprise a two-dimensional gas phase, a low-density commensurate (LDC) phase, and a higher-density incommensurate (HDI) phase. LEEM also shows the presence of an additional “precursor-HDI” phase with a surface unit mesh area only ≈3% less than the HDI phase. Normal incidence x-ray standing-wave measurements of the HDI phase yield almost identical structural parameters to the LDC phase for which a full structure determination has been previously reported. The results show TCNQ does not adopt the inverted bowl distortion favored in earlier density functional theory calculations of TCNQ on coinage metal surfaces, but the N atoms are twisted out of the molecular plane, an effect found for the LDC phase to be due to incorporation of Ag adatoms. The possible role of Ag adatoms in the HDI phase, and in the transition from the precursor-HDI phase, is discussed.
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Nov 2019
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I09-Surface and Interface Structural Analysis
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Diamond Proposal Number(s):
[18974]
Abstract: Potassium-ion (K-ion) batteries potentially offer numerous advantages over conventional lithium-ion batteries as a result of the high natural abundance of potassium and its lower positive charge density, compared with lithium. This introduces the possibility of using K-ion in fast charging applications, in which cost effectiveness is also a major factor. Unlike for sodium-ion batteries, graphite can be used as an anode in K-ion cells, for which an extensive supply chain, electrode manufacturing infrastructure, and knowledge already exists. However, the performance of graphite anodes in K-ion cells does not meet expectations, with rapid capacity fading and poor first cycle irreversible capacities often reported. Here we investigate the formation and composition of the solid electrolyte interphase (SEI) as well as K+ insertion in graphite anodes in K-ion batteries. Through the use of energy-tuned synchrotron-based X-ray photoelectron spectroscopy, we make a detailed analysis at three probing depths up to ~50 nm of graphite anodes cycled to various potentials on the first discharge-charge cycle. Extensive SEI formation from a KPF6/DEC:EC electrolyte system is found to occur at low potentials during the insertion of potassium into graphite. During the subsequent removal of potassium from the structure, the thick SEI is partially stripped from the electrode, demonstrating that the SEI layer is unstable and contributes to a significant proportion of the capacity on both discharge and charge. With this in mind, further work is required to develop an electrolyte system with stable SEI layer formation on graphite in order to advance K-ion battery technology.
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Nov 2019
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I03-Macromolecular Crystallography
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Diamond Proposal Number(s):
[19880]
Abstract: Lysostaphin is a bacteriolytic enzyme targeting peptidoglycan, the essential component of the bacterial cell envelope. It displays a very potent and specific activity toward staphylococci, including methicillin-resistant Staphylococcus aureus. Lysostaphin causes rapid cell lysis and disrupts biofilms, and is therefore a therapeutic agent of choice to eradicate staphylococcal infections. The C-terminal SH3b domain of lysostaphin recognizes peptidoglycans containing a pentaglycine crossbridge and has been proposed to drive the preferential digestion of staphylococcal cell walls. Here we elucidate the molecular mechanism underpinning recognition of staphylococcal peptidoglycan by the lysostaphin SH3b domain. We show that the pentaglycine crossbridge and the peptide stem are recognized by two independent binding sites located on opposite sides of the SH3b domain, thereby inducing a clustering of SH3b domains. We propose that this unusual binding mechanism allows synergistic and structurally dynamic recognition of S. aureus peptidoglycan and underpins the potent bacteriolytic activity of this enzyme.
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Nov 2019
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I07-Surface & interface diffraction
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Diamond Proposal Number(s):
[17223]
Open Access
Abstract: Halide perovskites are emerging as valid alternatives to conventional photovoltaic active materials owing to their low cost and high device performances. This material family also shows exceptional tunability of properties by varying chemical components, crystal structure, and dimensionality, providing a unique set of building blocks for new structures. Here, highly stable self‐assembled lead–tin perovskite heterostructures formed between low‐bandgap 3D and higher‐bandgap 2D components are demonstrated. A combination of surface‐sensitive X‐ray diffraction, spatially resolved photoluminescence, and electron microscopy measurements is used to reveal that microstructural heterojunctions form between high‐bandgap 2D surface crystallites and lower‐bandgap 3D domains. Furthermore, in situ X‐ray diffraction measurements are used during film formation to show that an ammonium thiocyanate additive delays formation of the 3D component and thus provides a tunable lever to substantially increase the fraction of 2D surface crystallites. These novel heterostructures will find use in bottom cells for stable tandem photovoltaics with a surface 2D layer passivating the 3D material, or in energy‐transfer devices requiring controlled energy flow from localized surface crystallites to the bulk.
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Nov 2019
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B21-High Throughput SAXS
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Diamond Proposal Number(s):
[24748]
Abstract: The production of lignin nanoparticles (LNPs) has opened new routes to utilization of lignin in advanced applications. The existing challenge, however, is to develop a production method that can easily be adapted on an industrial scale. In this study, we demonstrated a green and rapid method of preparing LNPs directly from a sulfur-free alkaline pulping liquor by combining acid-precipitation and ultrasonication. The combined method produced spherical LNPs, with hierarchical nanostructure and highly negative surface charge, within only 5-min of sonication. The mild, rapid sonication was achieved by sonicating directly without prior drying the acid-precipitated and dialyzed lignin. Optimization of the method revealed the potential for minimizingacid consumption, shortening the dialysis time, and processing directly the alkaline liquor with as much as 20 wt% lignin. The isolated LNPs were stable during storage for 180 days, at a pH range of 4–7 and in a dispersing medium below 0.1 M NaCl. The LNPs also displayed excellent emulsifying properties, stabilizing oil-in-water emulsions. Thus, this simple and energy-efficient method opens a sustainable, straightforward and scalable route to production of solvent-free LNPs, with high potential as interface stabilizers of multi-phase systems in the food and medical industries.
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Nov 2019
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I04-Macromolecular Crystallography
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Abstract: d‐Amino acids are the “wrong” enantiomers of amino acids as they are not used in proteins synthesis but evolved in selected functions. On this side, d‐aspartate (d‐Asp) plays several significant roles in mammals, especially as an agonist of N‐methyl‐d‐aspartate receptors (NMDAR), and is involved in relevant diseases, such as schizophrenia and Alzheimer's disease. In vivo modulation of d‐Asp levels represents an intriguing task to cope with such pathological states. As little is known about d‐Asp synthesis, the only option for modulating the levels is via degradation, which is due to the flavoenzyme d‐aspartate oxidase (DASPO). Here we present the first three‐dimensional structure of a DASPO enzyme (from human) which belongs to the d‐amino acid oxidase family. Notably, human DASPO differs from human d‐amino acid oxidase (attributed to d‐serine degradation, the main coagonist of NMDAR) showing peculiar structural features (a specific active site charge distribution), oligomeric state and kinetic mechanism, and a higher FAD affinity and activity. These results provide useful insights into the structure‐function relationships of human DASPO: modulating its activity represents now a feasible novel therapeutic target.
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Nov 2019
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I04-Macromolecular Crystallography
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Richard A
Ward
,
Mark J
Anderton
,
Paul A.
Bethel
,
Jason
Breed
,
Calum
Cook
,
Emma
Davies
,
Andrew
Dobson
,
Zhiqiang
Dong
,
Gary
Fairley
,
Paul
Farrington
,
Lyman J.
Feron
,
Vikki
Flemington
,
Francis D
Gibbons
,
Mark A.
Graham
,
Ryan David Robert
Greenwood
,
Lyndsey
Hanson
,
Philip
Hopcroft
,
Rachel
Howells
,
Julian
Hudson
,
Michael
James
,
Clifford D.
Jones
,
Christopher
Jones
,
Yongchao
Li
,
Scott
Lamont
,
Richard James
Lewis
,
Nicola A.
Lindsay
,
James Francis
Mccabe
,
Thomas M.
Mcguire
,
Philip B.
Rawlins
,
Karen
Roberts
,
Linda
Sandin
,
Iain
Simpson
,
Steve
Swallow
,
Jia
Tang
,
Gary
Tomkinson
,
Michael
Tonge
,
Zhenhua
Wang
,
Baochang
Zhai
Diamond Proposal Number(s):
[20015, 17180]
Abstract: The RAS/MAPK pathway is a major driver of oncogenesis and is dysregulated in approximately 30% of human cancers, primarily by mutations in the BRAF or RAS genes. The extracellular-signal-regulated kinases (ERK1 and ERK2) serve as central nodes within this pathway. The feasibility of targeting the RAS/MAPK pathway has been demonstrated by the clinical responses observed through the use of BRAF and MEK inhibitors in BRAF V600E/K metastatic melanoma, however resistance frequently develops. Importantly, ERK1/2 inhibition may have clinical utility in overcoming acquired resistance to RAF and MEK inhibitors where RAS/MAPK pathway reactivation has occurred, such as relapsed BRAF V600E/K melanoma. We describe our structure-based design approach leading to the discovery of AZD0364, a potent and selective inhibitor of ERK1 and ERK2. AZD0364 exhibits high cellular potency (IC50 = 6 nM) and excellent physico-chemical and absorption, distribution, metabolism, and excretion (ADME) properties and has demonstrated encouraging anti-tumour activity in pre-clinical models.
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Nov 2019
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I19-Small Molecule Single Crystal Diffraction
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Diamond Proposal Number(s):
[18908]
Abstract: Magnetic photoswitching is a highly important but relatively rare phenomenon for enabling optical writing/reading of the magnetic state of a molecule. In this work, an unprecedented site-selective double photoswitching is reported from the assembly of two different “photomagnetic chromophores” into a single hexanuclear molecule: namely, a spin-crossover Fe(II) center exhibiting light-induced excited spin state trapping (LIESST) and a photochemically active octacyanometalate(IV) unit. Four different magnetization levels are accessible through the appropriate combination of violet/red light and temperature, results that highlight the potential of photomagnetic molecules as future molecular memory cells.
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Nov 2019
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I07-Surface & interface diffraction
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Diamond Proposal Number(s):
[13569]
Abstract: The biopolymer cellulose is investigated in terms of the crystallographic order within thin films. The films were prepared by spin coating of a trimethylsilyl cellulose precursor followed by an exposure to HCl vapors; two different source materials were used. Careful pre-characterization of the films was performed by infrared spectroscopy and atomic force microscopy. Subsequently, the films were investigated by grazing incidence X-ray diffraction using synchrotron radiation. The results showed broad diffraction peaks, indicating a rather short correlation length of the molecular packing in the range of a few nm. The analysis of the diffraction pattern was based on the known structures of crystalline cellulose, since the observed peak pattern was comparable to cellulose phase II and phase III. The dominant fraction of the film is formed by two different types of layers which are oriented parallel to the substrate surface. The stacking of the layers results in a one-dimensional crystallographic order with a defined interlayer distance of either 7.3 Å or 4.2 Å. As a consequence, two different preferred orientations of the polymer chains are observed. In both cases, polymer chain axes are aligned parallel to the substrate surface, and the orientation of the cellulose molecules are concluded to be either edge-on or flat-on. A minor fraction of the cellulose molecules form nanocrystals that are randomly distributed within the films. In this case, the molecular packing density was found to be smaller in comparison to the known crystalline phases of cellulose.
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Nov 2019
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B22-Multimode InfraRed imaging And Microspectroscopy
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Arun S.
Babal
,
Lorenzo
Donà
,
Matthew R.
Ryder
,
Kirill
Titov
,
Abhijeet K.
Chaudhari
,
Zhixin
Zeng
,
Chris S.
Kelley
,
Mark D.
Frogley
,
Gianfelice
Cinque
,
Bartolomeo
Civalleri
,
Jin-chong
Tan
Diamond Proposal Number(s):
[14902]
Abstract: Research on the broadband dielectric response of metal-organic frameworks (MOFs) is an emergent field that could yield exciting device applications, such as smart optoelectronics, terahertz sensors, high-speed telecommunications and microelectronics. Hitherto, a detailed understanding of the physical mechanisms controlling the frequency-dependent dielectric and optical behavior of MOFs is lacking because a large number of studies have focused only on static dielectric constants. Herein we employed high-resolution spectroscopic techniques in combination with periodic ab initio density functional theory (DFT) calculations to establish the different polarization processes for a porous copper-based MOF, termed HKUST-1. We used alternating current measurements to determine its dielectric response between 4 Hz and 1.5 MHz where orientational polarization is predominant, while synchrotron infrared (IR) reflectance was used to probe the far-IR, mid-IR, and near-IR dielectric response across the 1.2 THz to 150 THz range (ca. 40 – 5000 cm-1) where vibrational and optical polarizations are principal contributors to its dielectric permittivity. We demonstrate the role of pressure on the evolution of broadband dielectric response, where THz vibrations reveal distinct blue and red shifts of phonon modes from structural deformation of the copper paddle-wheel and the organic linker, respectively. We also investigated the effect of temperature on dielectric constants in the MHz region pertinent to microelectronics, to study temperature-dependent dielectric losses via dissipation in an alternating electric field. The DFT calculations offer insights into the physical mechanisms responsible for dielectric transitions observed in the experiments and enable us to explain the frequency shifts phenomenon detected under pressure. Together, the experiments and theory have enabled us to glimpse into the complex dielectric response and mechanisms underpinning a prototypical MOF subject to pressure, temperature, and vast frequencies.
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Nov 2019
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